| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,532,141 | C→T | A13V (GCG→GTG) | SAUSA300_RS13010 → | methicillin resistance protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,532,141 | 0 | C | T | 90.9% | 22.3 / ‑5.9 | 11 | A13V (GCG→GTG) | SAUSA300_RS13010 | methicillin resistance protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (9/1); total (10/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAA > NC_007793/2532047‑2532237 | aTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGTGTTTa > 1:1751555/1‑100 (MQ=255)aTAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGTGTTTa > 1:5783177/1‑100 (MQ=255) tttCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGTGTTTACAACAAAGCATTTTTCACATTACACACAAt > 1:2998726/2‑100 (MQ=255) gagGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGTGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCAtt > 1:345188/1‑100 (MQ=255) acctgggatAAAATGAACTTTGTAACGTCGACTTCGGATGAGTTCAATGTGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACa > 1:5207948/4‑100 (MQ=255) gggatAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCa > 1:2962480/1‑100 (MQ=255) tgccgggTAACGTTGACTTCGGATGAGTTCAATGTGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGAtt > 1:2635127/7‑100 (MQ=255) ccaaCGTTGACTTCGGATGAGTTCAATGTGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAg > 1:4234260/3‑100 (MQ=255) tGACTTCGGATGAGTTCAATGTGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGAtgt > 1:2634177/1‑100 (MQ=255) tGACTTCGGATGAGTTCAATGTGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGAtgt > 1:6628204/1‑100 (MQ=255) aTGTGTTTACAACTAAGCATTTTTCTCATTACACACAATCAGCTATTCATTACTATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTaa < 1:5623694/100‑1 (MQ=255) | ATAGCATTATTAATAAATTCAAAAATTATAGTTCAATTCAGAGAGGGATGGGATAAAATGAACTTTGTAACGTTGACTTCGGATGAGTTCAATGCGTTTACAACAAAGCATTTTTCACATTACACACAATCAGCTATTCATTACAATCATAGAGTTGATTTAAAAGGCGATGTGCATCTTGTAGGGGTTAA > NC_007793/2532047‑2532237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |