| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,472,542 | C→T | S26S (TCC→TCT) | SAUSA300_RS12705 → | TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,472,542 | 0 | C | T | 97.8% | 121.6 / ‑5.7 | 45 | S26S (TCC→TCT) | SAUSA300_RS12705 | TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (44/0); total (45/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
CACAAAGGTGTAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCCACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAATTTGATTTAT > NC_007793/2472448‑2472618 | cacaAAGGTGTAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTAcaca > 1:3799702/1‑97 (MQ=255)cacaAAGGTGTAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTaa > 1:1280611/1‑100 (MQ=255)cacaAAGGTGTAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTaa > 1:5509932/1‑100 (MQ=255) aaGGTGTAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATg > 1:2362283/1‑100 (MQ=255) aaGGTGTAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATg > 1:4389921/1‑100 (MQ=255) ggtAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGAttt > 1:1739177/2‑100 (MQ=255) gtAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGCATATCCTTTTCAAGAAATATCTACTAAAATGATTTg > 1:1964137/1‑100 (MQ=255) gtAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATTCTTTTCAAGAAATATCTACTAAAATGATTTg > 1:6211846/1‑100 (MQ=255) gtAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTg > 1:3663911/1‑100 (MQ=255) aaCAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGCTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCCACTAAAATGATTTgcg > 1:1898409/1‑100 (MQ=255) aCAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTgcgc > 1:6618065/1‑100 (MQ=255) tatGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTAt > 1:2770604/1‑100 (MQ=255) gAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTagatc > 1:113199/1‑96 (MQ=255) gaCGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTaa > 1:4971059/2‑100 (MQ=255) aaCGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTaa > 1:6559235/1‑100 (MQ=255) aCGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAat > 1:6239672/1‑100 (MQ=255) taCAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAatat > 1:4262454/2‑100 (MQ=255) caCAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAatat > 1:1396178/2‑100 (MQ=255) aCAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATAtt > 1:2496792/1‑100 (MQ=255) taaGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTa > 1:6630347/2‑100 (MQ=255) cAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTa > 1:3519022/1‑100 (MQ=255) cAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTa > 1:6440689/1‑100 (MQ=255) cAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTa > 1:4927920/1‑100 (MQ=255) aGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAAt > 1:437521/1‑100 (MQ=255) aGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAAt > 1:5327639/1‑100 (MQ=255) cAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATg > 1:937356/1‑100 (MQ=255) aaaCGCACTTGTTGATTTGATGGCTGCATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGat > 1:4182219/1‑100 (MQ=255) caCGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGatt > 1:471099/2‑100 (MQ=255) aaCGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGatt > 1:887958/1‑100 (MQ=255) aaCGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGatt > 1:6393416/1‑100 (MQ=255) tgCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTACTCGTTCTACTTTTTATGattat > 1:5283353/2‑100 (MQ=255) gccACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGattat > 1:3151693/3‑100 (MQ=255) cGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGattat > 1:748036/1‑100 (MQ=255) cGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCATTCTACTTTTTATGattat > 1:3723000/1‑100 (MQ=255) acACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGattatt > 1:779174/2‑100 (MQ=255) aCTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTAc > 1:5260023/1‑100 (MQ=255) ttgatGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAAt > 1:5611473/1‑100 (MQ=255) tgatGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAAtt > 1:6045307/1‑100 (MQ=255) tgatGGCTGAATATCCTTTCCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAAtt > 1:2837467/1‑100 (MQ=255) cgctGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAAtt > 1:4927537/4‑100 (MQ=255) agatGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAAtt > 1:317868/2‑100 (MQ=255) agatGGCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAAtt > 1:4723207/2‑100 (MQ=255) aaggCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAATTTg > 1:5331637/3‑100 (MQ=255) ggCTGAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCTTTCTACTTTTTATGATTATTACAAAGATAAATTTggt > 1:5030309/1‑98 (MQ=255) gAATATCCTTTTCAAGAAATATCTACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAATTTGATTTAt > 1:1627497/1‑100 (MQ=255) | CACAAAGGTGTAACAATATGAAACGACAAGCCAAAATAGAAATTCAAAACGCACTTGTTGATTTGATGGCTGAATATCCTTTTCAAGAAATATCCACTAAAATGATTTGCGCGTATTGTAATATTAATCGTTCTACTTTTTATGATTATTACAAAGATAAATTTGATTTAT > NC_007793/2472448‑2472618 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |