| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,275,549 | T→G | D432E (GAT→GAG) | SAUSA300_RS11610 → | PTS lactose transporter subunit IIB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,275,549 | 0 | T | G | 100.0% | 39.1 / NA | 16 | D432E (GAT→GAG) | SAUSA300_RS11610 | PTS lactose transporter subunit IIB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (14/2); total (14/2) | |||||||||||
GTGGCTCGATTAAAAACCAAGGTAATCGATTTTTAAACATATTAGTCGTTTGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGATCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGATTTGAAGTCACTAGATTTAAGTCAATATGATGGCATTATTTCTACTGTG > NC_007793/2275452‑2275645 | gtggCTCGATTAAAAACCAAGGTAATCGATTTTTAAACATATTAGTCGTTTGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCa < 1:2163045/100‑1 (MQ=255) aCCAAGGTAATCGATTTTTAAACATATTAGTCGTTTGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGAt > 1:6510145/1‑100 (MQ=255) ccaGGTAATCGATTTTTAAACATATTAGTCGTTTGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTTGTCTAGAGCAAGTTTTTAGTGAGATTg > 1:5081591/3‑100 (MQ=255) ttAAACATATTAGTCGTTTGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAg > 1:3853565/1‑100 (MQ=255) agaCATATTAGTCGTTTGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCa > 1:2371470/3‑100 (MQ=255) ctttGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCAtcagccagaacgg > 1:1508832/2‑95 (MQ=255) cctGCAGCAGTGGTATGGGGACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGAttt > 1:271191/3‑100 (MQ=255) ttGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGagatc > 1:3205564/1‑96 (MQ=255) ttGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGagatc > 1:6373871/1‑96 (MQ=255) ttGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGAGAtcgg > 1:4471230/1‑97 (MQ=255) ttGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGCGAGACTGAGCGTTTTACACAAGCATCAGACAGcagttcg > 1:5669034/1‑94 (MQ=255) ctGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCAtcagccaggagatcg > 1:1919175/2‑93 (MQ=255) gcagTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCACCCAGAGATCGGAAgag > 1:12705/1‑98 (MQ=255) gcagTGGTATGGGAACTAGTCGTCTATTATCAACTAGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGCTTTGCAGTc > 1:5005113/1‑100 (MQ=255) ccTAGTCGTCTATTATCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGATTTGAAGTCACTAGATTTAAGTc > 1:77285/2‑100 (MQ=255) atCAACTCGTCTAGAGCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGATTTGAAGTCACTAGATTTAAGTCAATATGATGGCatt < 1:3201988/100‑1 (MQ=255) agagCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGATTTGAAGTCACTAGATTTAAGTCAATATGATGGCATTATTTCTACtgtg > 1:6244481/1‑100 (MQ=255) | GTGGCTCGATTAAAAACCAAGGTAATCGATTTTTAAACATATTAGTCGTTTGCAGCAGTGGTATGGGAACTAGTCGTCTATTATCAACTCGTCTAGATCAAGTTTTTAGTGAGATTGAGCGTATTACACAAGCATCAGTCAGCGATTTGAAGTCACTAGATTTAAGTCAATATGATGGCATTATTTCTACTGTG > NC_007793/2275452‑2275645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |