| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,234,368 | C→T | E122E (GAG→GAA) | SAUSA300_RS11410 ← | peptide chain release factor 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,234,368 | 0 | C | T | 98.4% | 171.2 / NA | 64 | E122E (GAG→GAA) | SAUSA300_RS11410 | peptide chain release factor 1 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (7/56); minor base G (0/1); total (7/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCACTTTCAGACGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCCTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCA > NC_007793/2234273‑2234461 | tccgatctaGACGCTTCTACTATGTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTtcat < 1:290014/92‑1 (MQ=255) tttCAGACGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATcacc < 1:3076141/100‑1 (MQ=255) tttCAGACGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATcacc < 1:1718003/100‑1 (MQ=255) ttCAGACGCTTCTATTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCGGCTTCATcacca < 1:5003207/100‑1 (MQ=255) tCAGACGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATcaccaa < 1:360934/100‑2 (MQ=255) cAGACGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATcaccact < 1:942589/100‑2 (MQ=255) cAGACGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCaccacc < 1:4829386/100‑1 (MQ=255) gACGCTTCTACTATGTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCGTCATCACCACcta < 1:4813408/100‑2 (MQ=255) tcttccgatctaTTTCGGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgt < 1:3501178/91‑2 (MQ=255) tcttccgatctaTTTCCGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctga < 1:5477797/91‑2 (MQ=255) tcttccgatctaTTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgc < 1:2846192/91‑1 (MQ=255) cgatctCTACTGTTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgc < 1:6251527/95‑1 (MQ=255) atctttCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAACAAAAATCGCAGCTTCATCACCACctgc < 1:1167369/96‑1 (MQ=255) aCGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgg < 1:6536679/100‑2 (MQ=255) aCGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgc < 1:1849365/100‑1 (MQ=255) aCGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgc < 1:1671566/100‑1 (MQ=255) cttccgatctaTTTCTGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgct < 1:4023190/92‑1 (MQ=255) cttccgatctaTTTCGGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgca < 1:5452610/92‑2 (MQ=255) cGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCCCctgcc < 1:6462660/100‑2 (MQ=255) cGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgct < 1:2171032/100‑1 (MQ=255) atcTTCTGTTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgcc < 1:183670/98‑2 (MQ=255) tcttccgatctttCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgctg < 1:1151502/90‑1 (MQ=255) tcTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCTCCAGCAAAAATCGCAGCTTCATCACCACctgcat < 1:849889/99‑3 (MQ=255) gCTTATACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCaccaccccctc > 1:14141/1‑95 (MQ=255) ttcgcctaTTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgctgcc < 1:409940/95‑2 (MQ=255) ttCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgctgct > 1:6110926/1‑100 (MQ=255) ttCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgctgcg < 1:3063237/100‑2 (MQ=255) ccgatctaTTTTGGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgctgct < 1:5514805/95‑1 (MQ=255) ccgatctaTTATAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCGAAAATCGCAGCTTCATCACCACctgctgca < 1:2599946/95‑2 (MQ=255) atCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATGCTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACctgctgca < 1:699970/99‑2 (MQ=255) tactaTTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTgctgctgct > 1:4465732/1‑100 (MQ=255) actaTTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGctc > 1:3485865/1‑100 (MQ=255) tGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGTTCTTATTTCTACAAt < 1:1497702/100‑1 (MQ=255) aaTCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACaagca < 1:501749/100‑4 (MQ=255) ccTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACgg < 1:4534935/100‑2 (MQ=255) tgATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCttga < 1:2169533/100‑3 (MQ=255) tgATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCttaa < 1:1626687/100‑3 (MQ=255) tgATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTg < 1:6048745/100‑1 (MQ=255) gATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCttgct < 1:3898322/100‑4 (MQ=255) aTTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGtc < 1:4797023/100‑1 (MQ=255) aTTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGtc < 1:689294/100‑1 (MQ=255) aTTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGtc < 1:2508045/100‑1 (MQ=255) aTTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGtc < 1:4673385/100‑1 (MQ=255) aTTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGtc < 1:874328/100‑1 (MQ=255) ttCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGtca < 1:2157289/100‑1 (MQ=255) tCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGtcat < 1:177834/100‑1 (MQ=255) aTACTTTGAATACATACGCATTAAATCTCCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTa < 1:657600/100‑1 (MQ=255) aTACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTa < 1:4120046/100‑1 (MQ=255) aTACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTa < 1:3725980/100‑1 (MQ=255) aTACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTa < 1:1683000/100‑1 (MQ=255) aCTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCTCCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAgg < 1:4219616/100‑1 (MQ=255) aCTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAgg < 1:4279039/100‑1 (MQ=255) aCTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAgg < 1:575021/100‑1 (MQ=255) atacatacGCATTAAATCACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCtttt < 1:3180826/100‑2 (MQ=255) cACCAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATAtttt > 1:2938308/1‑100 (MQ=255) cctgCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTaa > 1:1570453/4‑100 (MQ=255) ccAGCAAAAATCGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTaa > 1:3107998/1‑100 (MQ=255) cGCAGCTTCATCACTACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCa < 1:4874092/100‑1 (MQ=255) cGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCa < 1:5941120/100‑1 (MQ=255) cGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCa < 1:2441239/100‑1 (MQ=255) cGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCa < 1:681416/100‑1 (MQ=255) cGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCa < 1:4022834/100‑1 (MQ=255) cGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCa < 1:87830/100‑1 (MQ=255) cGCAGCTTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCa < 1:990356/100‑1 (MQ=255) | TCACTTTCAGACGCTTCTACTATTTCAGTTTTGAATCCTTGTGATTCAGCATACTTTGAATACATACGCATTAAATCACCAGCAAAAATCGCAGCCTCATCACCACCTGCTGCTGCTCTTATTTCTACAATAACGTCTTTGTCATCATTAGGATCTTTAGGAATCAATAATATTTTAAGCTCTTCTTCA > NC_007793/2234273‑2234461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |