D3A :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,148,597	T→A	F309I (TTT→ATT)	SAUSA300_RS10945 →	histidine kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,148,597	0	T	A	100.0%	1150.3 / NA	411	F309I (TTT→ATT)	SAUSA300_RS10945	histidine kinase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (401/10); total (401/10)

Only 100 of 411 total aligned reads displayed.

ATGAATGCTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATTTTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTCTTGA  >  NC_007793/2148501‑2148685

  gaatgCTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCg                                                                                     >  1:5020525/1‑100 (MQ=255)

   gatgCTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGa                                                                                    >  1:4108220/2‑100 (MQ=255)

   ctgcttataAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGa                                                                                    >  1:6226101/6‑100 (MQ=255)

   catgCTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGa                                                                                    >  1:4533736/2‑100 (MQ=255)

   aatgCTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGa                                                                                    >  1:2192553/1‑100 (MQ=255)

    atgCTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGAt                                                                                   >  1:798507/1‑100 (MQ=255)

      gCTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACACGAAATCAATATTCCGATTa                                                                                 >  1:3025861/1‑100 (MQ=255)

      ccTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTa                                                                                 >  1:4672681/2‑100 (MQ=255)

         ataAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTa                                                                              >  1:2943544/1‑100 (MQ=255)

           aaaaTTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATc                                                                            >  1:1036444/1‑100 (MQ=255)

              aTTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGaa                                                                         >  1:5737353/1‑100 (MQ=255)

                 ctaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGCTTAGTATCGAAATa                                                                      >  1:4808874/3‑100 (MQ=255)

                 caaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATa                                                                      >  1:560308/2‑100 (MQ=255)

                 acaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGaaaaa                                                                      >  1:5071970/3‑98 (MQ=255)

                 aaaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATa                                                                      >  1:1311992/1‑100 (MQ=255)

                  taTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAc                                                                     >  1:5095591/2‑100 (MQ=255)

                  caTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAc                                                                     >  1:3601274/2‑100 (MQ=255)

                  aaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAc                                                                     >  1:5167781/1‑100 (MQ=255)

                  aaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAc                                                                     >  1:6101338/1‑100 (MQ=255)

                  aaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAc                                                                     >  1:6399223/1‑100 (MQ=255)

                  aaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAc                                                                     >  1:4073202/1‑100 (MQ=255)

                  aaTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAc                                                                     >  1:3829081/1‑100 (MQ=255)

                   ctGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:4867856/2‑100 (MQ=255)

                   ctGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGCGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:704289/2‑100 (MQ=255)

                   aTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:89932/1‑100 (MQ=255)

                   aTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:3066034/1‑100 (MQ=255)

                   aTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:3989868/1‑100 (MQ=255)

                   aTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:4209403/1‑100 (MQ=255)

                   aTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:4441083/1‑100 (MQ=255)

                   aTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:4707137/1‑100 (MQ=255)

                   aTGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAcc                                                                    >  1:1120985/1‑100 (MQ=255)

                    tGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTGGTATCGAAATAccc                                                                   >  1:535930/1‑100 (MQ=255)

                    tGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAccc                                                                   >  1:4739461/1‑100 (MQ=255)

                    tGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAccc                                                                   >  1:6053371/1‑100 (MQ=255)

                    tGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATAccc                                                                   >  1:2360907/1‑100 (MQ=255)

                     ggTATCGAGAATCTTAATGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCg                                                                  >  1:3169770/1‑100 (MQ=255)

                     ggTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCg                                                                  >  1:3704043/1‑100 (MQ=255)

                     ggTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCg                                                                  >  1:6286949/1‑100 (MQ=255)

                     ggTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCg                                                                  >  1:4775135/1‑100 (MQ=255)

                     ggTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCg                                                                  >  1:1986464/1‑100 (MQ=255)

                     ggTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCg                                                                  >  1:247988/1‑100 (MQ=255)

                     ggTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCg                                                                  >  1:1850632/1‑100 (MQ=255)

                     ggTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATCTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCg                                                                  >  1:569400/1‑100 (MQ=255)

                        aTCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCAGATg                                                               >  1:1694838/1‑100 (MQ=255)

                          cGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATaaa                                                             >  1:3627747/1‑100 (MQ=255)

                          cGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGaa                                                             >  1:5783805/1‑100 (MQ=255)

                          cGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGACGaa                                                             >  1:4288337/1‑100 (MQ=255)

                             gaATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGaagta                                                          <  1:2385369/100‑1 (MQ=255)

                                tCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGaagtaagt                                                       <  1:1783377/100‑1 (MQ=255)

                                   tAAGGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:6159742/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTACAGGCTTAATTACTGCGAAAATTTTACGCGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:2719618/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGTAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:6601273/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCTGATGaagatcggaag                                                    >  1:1892263/1‑92 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCGGATGaagatcggaag                                                    >  1:6536439/1‑92 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGaagatcggaag                                                    >  1:5430088/1‑92 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:1564743/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:1734147/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:4470375/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:4750737/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:2088800/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:2822546/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:3257772/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:1253248/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:6625238/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:3558815/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:2450180/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:6562371/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:6256399/1‑100 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGAAGatcggaagagc                                                    >  1:3720635/1‑90 (MQ=255)

                                   tAAAGTACGTGAAATTAAAGGCTTAATCACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGc                                                    >  1:3505965/1‑100 (MQ=255)

                                    aaaGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCa                                                   >  1:1657792/1‑100 (MQ=255)

                                     tggTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCAt                                                  >  1:2612637/3‑100 (MQ=255)

                                         aCGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAAc                                              >  1:1802291/1‑100 (MQ=255)

                                                  gtaaGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATg                                     >  1:2542418/3‑100 (MQ=255)

                                                   ataGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGa                                    >  1:3898907/3‑100 (MQ=255)

                                                   aaaGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGa                                    >  1:1528771/1‑100 (MQ=255)

                                                    aaGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGAt                                   >  1:4958731/1‑100 (MQ=255)

                                                    aaGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGACGAAGTAAGTAGCATTAACTTGAATATGAt                                   >  1:4611640/1‑100 (MQ=255)

                                                     aGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGaaacagatc                                  >  1:745860/1‑93 (MQ=255)

                                                              tACTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAga                         >  1:2778672/1‑99 (MQ=255)

                                                               aCTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTc                        >  1:858806/1‑100 (MQ=255)

                                                               aCTGCGAAAATTTTACGTGCACAAGAAATGAATATTCCGACTAGTATCGAAATACCCGATGACGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTc                        >  1:5273585/1‑100 (MQ=255)

                                                                aagCGAAAATTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCg                       >  1:3375438/3‑100 (MQ=255)

                                                                      aaaTTTTACGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATGCCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTAt                 <  1:2014418/100‑1 (MQ=255)

                                                                             aCGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAGGTCGCAgatcggaagag          >  1:4906369/1‑90 (MQ=255)

                                                                             aCGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAgatcggaagag          >  1:6028003/1‑90 (MQ=255)

                                                                             aCGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGCCGCAGTATTGGtatt          >  1:2572528/1‑100 (MQ=255)

                                                                              cttGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGCTGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGtatta         >  1:3316148/3‑100 (MQ=255)

                                                                              cGTGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGtatta         >  1:319915/1‑100 (MQ=255)

                                                                              agTGCACAAGAAATGAATATTCCGATTAGTATTGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGCATTGGtatta         >  1:2234837/2‑100 (MQ=255)

                                                                               ctGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTCTTGGtattat        >  1:4360442/2‑100 (MQ=255)

                                                                               atGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGtattat        >  1:1154058/2‑100 (MQ=255)

                                                                                tGCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTattatt       >  1:1361813/1‑100 (MQ=255)

                                                                                 gCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTc      >  1:6477576/1‑100 (MQ=255)

                                                                                 gCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTc      >  1:345427/1‑100 (MQ=255)

                                                                                 gCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTc      >  1:2324710/1‑100 (MQ=255)

                                                                                 gCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTc      >  1:5182803/1‑100 (MQ=255)

                                                                                 gCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTc      >  1:549601/1‑100 (MQ=255)

                                                                                 gCACAAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTc      >  1:5945247/1‑100 (MQ=255)

                                                                                 acacaAGAAATGAATATTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTc      >  1:5878763/2‑100 (MQ=255)

ATGAATGCTATAAAATTAAATGGTATCGAGAATCTTAAAGTACGTGAAATTAAAGGCTTAATTACTGCGAAAATTTTACGTGCACAAGAAATGAATTTTCCGATTAGTATCGAAATACCCGATGAAGTAAGTAGCATTAACTTGAATATGATCGATTTAAGTCGCAGTATTGGTATTATTCTTGA  >  NC_007793/2148501‑2148685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`