| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,135,915 | T→C | L349P (CTA→CCA) | SAUSA300_RS10870 → | potassium transporter KtrB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,135,915 | 0 | T | C | 96.2% | 61.7 / ‑5.2 | 26 | L349P (CTA→CCA) | SAUSA300_RS10870 | potassium transporter KtrB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (23/2); minor base G (1/0); total (24/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TATATACGTAAAGAAAATAATGTTTCAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCTATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAC > NC_007793/2135821‑2136008 | acacaccGTAAAGAAAATAATGTTTCAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCCATTTa > 1:2044963/7‑100 (MQ=255) tataCGTAAAGAAAATAATGTTTCAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCCATTTATc < 1:2583983/100‑1 (MQ=255) cAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCCATTTATCGGCATCATTACTTTTATATTATc > 1:6342542/1‑100 (MQ=255) cTGACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCGATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATc > 1:3263595/1‑100 (MQ=255) gACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCAt > 1:5300214/1‑100 (MQ=255) gACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCAt > 1:4192015/1‑100 (MQ=255) gACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCAt > 1:343145/1‑100 (MQ=255) gccaCATATAAAACTATCTATTGTTACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTa > 1:1670936/4‑100 (MQ=255) atTGTTACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCGAGTTATTATTCGAAg > 1:4225623/1‑100 (MQ=255) atTGTTACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAg > 1:5804021/1‑100 (MQ=255) atTGTTACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAg > 1:1948652/1‑100 (MQ=255) atTGTTACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAg > 1:2022827/1‑100 (MQ=255) gTTGCCATTAATATCTCATTTCCATTTATCAGTATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGCTATTATTCGAAGTgg > 1:6644006/1‑100 (MQ=255) tACCATTAATATCTCATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGtt > 1:5719796/1‑100 (MQ=255) tAATATCTCATTTCCATTTATCAGCGTCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCa > 1:1653836/1‑100 (MQ=255) cgatCTCATTCCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCAtt < 1:4601157/98‑1 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTTTTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:3033721/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:2911685/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:2455616/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:2297088/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:4411650/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:4430428/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:1860734/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:6283594/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:1549874/1‑100 (MQ=255) cATTTCCATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAc > 1:1531183/1‑100 (MQ=255) | TATATACGTAAAGAAAATAATGTTTCAGTATTCAATAAAGAAATATCTGACAAACATATAAAACTATCTATTGTTACCATTAATATCTCATTTCTATTTATCAGCATCATTACTTTTATATTATCGATAATTAATCCGAACATATCATTAATCAAGTTATTATTCGAAGTGGTTTCTGCATTCGGAAC > NC_007793/2135821‑2136008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |