Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,119,966	A→T	A57A (GCT→GCA)	SAUSA300_RS10760 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,119,966	0	A	T	100.0%	20.7 / NA	30	A57A (GCT→GCA)	SAUSA300_RS10760	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (10/20);  total (10/20)

TACCTACCATTTCATGACTAAGTTCATTAGTTTGTCCTGTTCATCTGTGTTATTTTCAATCCATTCATAAACACTTTGTTTCAAAATATCTAAAGCTGTGTATAGATCGTTCTCATCAGAAA  >  NC_007793/2119873‑2119994                                                                                              |                             ctcctaccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTATAATGCtgtg                        <  1:3021953/98‑1 (MQ=11)  tcctaccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTgtgt                       <  1:715537/99‑1 (MQ=11)  cctgtccATCTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTgtgt                       >  1:1846213/6‑100 (MQ=2)  ccgatctaTTTCCTGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCACAAATAGAGTGATTTAATATGTCTAATGCtgtca                       <  1:2263688/93‑3 (MQ=9)   cctaccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCCTTCCTAAATAGATTGATTTAATATGTCTAATGCTGTGta                      >  1:2872532/1‑100 (MQ=2)   cctaccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGta                      >  1:5822417/1‑100 (MQ=1)   cctaccATTTCATGACTAAGTTAATTAGTCTGTCATAATCATCTGCGTTTTCTTCAATCCATTCGTAAATAGATTGATTTAATATGTCTAATGCtgtggt                      <  1:1015559/100‑3 (MQ=2)   cctaccATTTCATGACTAAGTTAATTAGTCTGTCATAATCATCTGCGTTTTCTTCAATCCATTCGTAAATAGATTGATTTAATATGTCTAATGCtgtgca                      >  1:5617270/1‑98 (MQ=2)   cctaccATTTCATGACTAAGTTAATTAGTCTGTCATAATCATCTGCGTTTTCTTCAATCCATTCGTAAATAGATTGATTTAATATGTCTAATGCTGCGta                      >  1:1432937/1‑100 (MQ=2)   cctaacATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATATCTAATGCTGTGta                      >  1:727510/1‑100 (MQ=11)   ccgcccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAACAGATTGATTTAATATGTCTAATGCTGTGta                      >  1:4059011/5‑100 (MQ=11)   ccaaccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTTAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGta                      <  1:1821872/97‑1 (MQ=0)    ctgccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:232383/97‑1 (MQ=2)    ctgccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:4646530/97‑1 (MQ=2)    ctcacATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:4036766/96‑1 (MQ=2)    ctactaTTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:4056617/100‑1 (MQ=2)    ctaccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:2758902/100‑1 (MQ=11)    ctaccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:917267/100‑1 (MQ=11)    ctaccATTTCATGACTAAGTTAATTAGTCTGTCATAATCATCTGCGTTTTCTTCAATCCATTCGTAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:6122751/100‑1 (MQ=2)    ctaccATTTCATGACTAAGTTAATTAGTCTGTCATAATCATCTGCGTTTTCTTCAATCCATTCGTAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:4051655/100‑1 (MQ=2)    ctaccATTTCATGACTAAGTTAATTAGTCTGTCATAATCATCTGCGTTTTCTTCAATCCATTCGTAAATAGATTGATTTAATATGTCTAATGCTATGcat                     >  1:956122/1‑100 (MQ=2)    ctaccATATCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGAGTGATTTAGTATGTCTAATGCTGTGtat                     <  1:5496132/100‑1 (MQ=2)    cctccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     >  1:3682866/4‑100 (MQ=2)    cctcattttCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:6615137/94‑1 (MQ=2)    ccaccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:1169752/98‑1 (MQ=2)    ataccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtat                     <  1:1194277/99‑1 (MQ=11)     ttccATTTCATGACTAAGTTAATTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGtatg                    <  1:2887773/98‑2 (MQ=2)      accATTTCATGACTAAGTTAATTAGCCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGTATAg                   >  1:3074759/1‑100 (MQ=2)                      gTTAATTAGTCTGTTATAATCATCTGCGTTTTCTTCAATCCATTCGTAAATAGATTGATTTAATATGTCTAATGCTGTGTATAGATCGTTCTCATTAgtt   <  1:4942602/100‑3 (MQ=9)                       ttaaTTAGTCTGTCCTGTTCATCTGTGTTCTCTTCAATCCATTCATAAATAGATTGATTTAATATGTCTAATGCTGTGTATAGATCATTCtcatctgtcg  <  1:6575705/97‑6 (MQ=9)                                                                                              |                             TACCTACCATTTCATGACTAAGTTCATTAGTTTGTCCTGTTCATCTGTGTTATTTTCAATCCATTCATAAACACTTTGTTTCAAAATATCTAAAGCTGTGTATAGATCGTTCTCATCAGAAA  >  NC_007793/2119873‑2119994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑