Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,098,466	C→T	A948T (GCG→ACG)	SAUSA300_RS10590 ←	phage tail tape measure protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,098,466	0	C	T	100.0%	10.9 / NA	6	A948T (GCG→ACG)	SAUSA300_RS10590	phage tail tape measure protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (1/5);  total (1/5)

TTTCATTTCTGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCGCAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGTTCTGTACCAGTGTGTAACTTAGGTATTTTATCCATTC  >  NC_007793/2098397‑2098546                                                                      |                                                                                 tttcatttcTAAAACCATTTGGACCATTTCCGCGTCCCTTATCCCCAGCTGTAGCGAATGTGTCGCGTGTAATCTTACCGTTCTTAACTAATCTTgtagt                                                    <  1:5035086/100‑1 (MQ=255)            aaaCCATTTGGACCATTTCCGCGTCCCTTATCCCCAACTGTAGCGAATGTGTCACGTGTAATCTTACCGTTCTTAACTAATCTTGTAGTAGTAtgtgtgt                                         <  1:2558854/100‑1 (MQ=255)            aaaCCATTTGGACCATTTCCGCGTCCCTTATCCCCAACTGTAGCGAATGTGTCACGTGTAATCTTACCGTTCTTAACTAATCTTGTAGTAGTAtgtgtgt                                         <  1:315131/100‑1 (MQ=255)                      gACCATTTCCGCGTCCCTTATCCCCAACTGTAGCGAATGTGTCACGTGTAATCTTACCGTTCTTAACTAATCTTATAGTAGTATGTGTGTGCTCTGTAcc                               <  1:2149253/100‑1 (MQ=255)                                               aaCTGTAGCGAATGTGTCACGTGTAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGCTCTGTACCAGTGTGTAACCTAGGTATTTCATcc      <  1:5942197/100‑1 (MQ=255)                                                   gTAGCGAATGTGTCACGTGTAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGCTCTGTACCAGTGTGTAACCTAGGTATTTCATCCAtac  >  1:1076726/1‑98 (MQ=255)                                                                      |                                                                                 TTTCATTTCTGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCGCAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGTTCTGTACCAGTGTGTAACTTAGGTATTTTATCCATTC  >  NC_007793/2098397‑2098546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑