Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,098,416	C→T	P964P (CCG→CCA)	SAUSA300_RS10590 ←	phage tail tape measure protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,098,416	0	C	T	100.0%	22.1 / NA	10	P964P (CCG→CCA)	SAUSA300_RS10590	phage tail tape measure protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (1/9);  total (1/9)

TTGAGCCTTTAGGTAAATAAGCGGTAGTATCTGTATTAGGTGTGATTACACGTTTACCATTAGGGAATTCAATTATTTCATTTCTGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCGCAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGT  >  NC_007793/2098322‑2098507                                                                                               |                                                                                            ttGAACCTTTAGGTAAATACGCCGTAGTATCTGTATTTGGTGTGATTACACGTTTTCCATTGGGGAATTCAATCATTTCATTTCTAAAACCATTTGGGcc                                                                                        <  1:3661058/100‑1 (MQ=255)    aaccTTTAGGTAAATACGCCGTAGTATCTGTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCATTTCTAAAACCATTTGGACCAtt                                                                                     <  1:111406/98‑1 (MQ=255)           aGGTAAATACGCCGTAGTATCTGTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCATTTCTAAAACCATTTGGACCATTTCcgcgc                                                                              <  1:1848179/100‑2 (MQ=255)                            taTCTGTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCATTTCTAAAACCATTTGGACCATTTCCGCGTCCCTTATCCCCAACTGt                                                             <  1:5425801/100‑1 (MQ=255)                            taTCTGTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCATTTCTAAAACCATTTGGACCATTTCCGCGTCCCTTATCCCCAACTGt                                                             <  1:5470077/100‑1 (MQ=255)                             aTCTGTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCATTTCTAAAACCATTTGGACCATTTCCGCGTCCCTTATCCCCAACTGTa                                                            <  1:607635/100‑1 (MQ=255)                                 gTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCATTTCTAAAACCATTTGGACCATTTCCGCGTCCCTTATCCCCatagatcggaa                                                        >  1:5593455/1‑90 (MQ=255)                                                                            tttcatttcTAAAACCATTTGGACCATTTCCGCGTCCCTTATCCCCAGCTGTAGCGAATGTGTCGCGTGTAATCTTACCGTTCTTAACTAATCTTgtagt             <  1:5035086/100‑1 (MQ=255)                                                                                       aaaCCATTTGGACCATTTCCGCGTCCCTTATCCCCAACTGTAGCGAATGTGTCACGTGTAATCTTACCGTTCTTAACTAATCTTGTAGTAGTAtgtgtgt  <  1:2558854/100‑1 (MQ=255)                                                                                       aaaCCATTTGGACCATTTCCGCGTCCCTTATCCCCAACTGTAGCGAATGTGTCACGTGTAATCTTACCGTTCTTAACTAATCTTGTAGTAGTAtgtgtgt  <  1:315131/100‑1 (MQ=255)                                                                                               |                                                                                            TTGAGCCTTTAGGTAAATAAGCGGTAGTATCTGTATTAGGTGTGATTACACGTTTACCATTAGGGAATTCAATTATTTCATTTCTGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCGCAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGT  >  NC_007793/2098322‑2098507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑