Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,092,546	A→C	L912L (CTT→CTG)	SAUSA300_RS10580 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,092,546	0	A	C	100.0%	34.7 / NA	15	L912L (CTT→CTG)	SAUSA300_RS10580	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (0/15);  total (0/15)

TCCATCAATATATGTTGAAATACCAAAATGTGACATATAAAGTGAACCGCCTGCGGTATTATTTCTAAACCTTAGATGTCCATCTTTAAGACGTGTGAATATATCATCGGTTGATCGTTTGCCTTTCCAAGTTCGTTGCACAATACCACCTAGTTCAATAGAATCATTC  >  NC_007793/2092459‑2092627                                                                                        |                                                                                  tcCCTCAATATATGTTGAAATCCCAAAATGTGACATATAAAGTGAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTaaaa                                                                       <  1:4152571/100‑2 (MQ=255) tcCATCAATATATGTTGAAATACCAAAATGTGACATATAAAGTGAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTaaaa                                                                       <  1:3503636/100‑2 (MQ=255)            atGTTGAAATACCAAAATGTGACATATAAAGTCAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTGAAAATATCGTCTGt                                                            <  1:5662151/100‑1 (MQ=255)             ggTTGAAATACCAAAATGTGACATATAAAGTGAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGta                                                           <  1:3470188/99‑2 (MQ=255)              gTTGAAATACCAAAATGTGACATATAAAGTGAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTg                                                          <  1:544055/100‑1 (MQ=255)                                     ataAAGTGAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTGCAGTCGCGTAAAAATAGCGTCTGTTGAACGTGTCCCTCTCCAAGTACGt                                   <  1:6554600/100‑1 (MQ=255)                                        aaGTGAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCTCTCCAAGTACGTTGc                                <  1:2092482/100‑1 (MQ=255)                                        aaGTGAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCCCTCCAAGTACGTTGc                                <  1:2274468/100‑1 (MQ=255)                                           tGAACCGCCTGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCTCTCCAAGTACGTTGcaca                             <  1:677552/100‑1 (MQ=255)                                                    tGCGGTATTATTTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCTCTCCAAGTACGTTGCACAATACCACCt                    <  1:4542301/100‑1 (MQ=255)                                                    tGCGGTATTATTTCGAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCTCTCCAAGTACGTTGCACAATACCACCt                    <  1:4998740/100‑1 (MQ=255)                                                          attattTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCTCTCCAAGTACGTTGCACAATACCACCTAGTTCa              <  1:1287582/100‑1 (MQ=255)                                                            tattTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCTCTCCAAGTACGTTGCACAATACCACCTAGTTCAAt            <  1:2944374/100‑1 (MQ=255)                                                             attTCTAAATCTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCTCTCCAAGTACGTTGCACAATACCACCTAGTTCagga           <  1:1621047/100‑4 (MQ=255)                                                                      tcTTAGGTGACCGTCTTTCAGTCGCGTAAAAATATCGTCTGTTGAACGTTTCCCTCTCCAAGTACGTTGCACAATACCACCTAGTTCAATAGAATCATTc  <  1:448293/99‑1 (MQ=255)                                                                                        |                                                                                  TCCATCAATATATGTTGAAATACCAAAATGTGACATATAAAGTGAACCGCCTGCGGTATTATTTCTAAACCTTAGATGTCCATCTTTAAGACGTGTGAATATATCATCGGTTGATCGTTTGCCTTTCCAAGTTCGTTGCACAATACCACCTAGTTCAATAGAATCATTC  >  NC_007793/2092459‑2092627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑