Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,088,192	C→T	intergenic (‑456/+233)	SAUSA300_RS10535 ← / ← SAUSA300_RS10540	peptidoglycan hydrolase/staphylokinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,088,192	0	C	T	100.0%	15.6 / NA	7	intergenic (‑456/+233)	SAUSA300_RS10535/SAUSA300_RS10540	peptidoglycan hydrolase/staphylokinase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (0/7);  total (0/7)

AACAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAACAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCCTTGA  >  NC_007793/2088095‑2088196                                                                                                  |     aaCAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCttt    <  1:5279721/100‑1 (MQ=255)  aCAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTg   <  1:2814565/100‑1 (MQ=255)  aCAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTg   <  1:3397233/100‑1 (MQ=255)  aCAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTg   <  1:498459/100‑1 (MQ=255)  aCAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTg   <  1:5191272/100‑1 (MQ=255)  aCAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTg   <  1:6099085/100‑1 (MQ=255)  aCAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTg   <  1:6224370/100‑1 (MQ=255)   cgaGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCTTTGa  <  1:2948823/98‑1 (MQ=255)                                                                                                  |     AACAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAACAAAAAACTAGCCCGAAAGCTAGCTATAACATACAATCTAAAAAGACGTCCCTTGA  >  NC_007793/2088095‑2088196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑