| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,087,964 | G→C | intergenic (‑228/+461) | SAUSA300_RS10535 ← / ← SAUSA300_RS10540 | peptidoglycan hydrolase/staphylokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,087,964 | 0 | G | C | 100.0% | 34.1 / NA | 14 | intergenic (‑228/+461) | SAUSA300_RS10535/SAUSA300_RS10540 | peptidoglycan hydrolase/staphylokinase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (4/10); total (4/10) | |||||||||||
AGTGAAGGGCAAAAAGGATATCAATTGCAGGATAAGTGTTAGGTTACTAGGCCACTTAACAGGCTATATAGTTCACTCCTACTATATACAGTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGAGGGAGTAGTATGAAAACTATGC > NC_007793/2087874‑2088053 | tgTGAAGGGCAAAAAGGATATCAATTGCAGGATAAGTGTTAGGTTACTAGGCCACTTAACAGGCTATATAGTTCACTCCTACTATATACACTTAATtata > 1:1798395/2‑100 (MQ=255) cAATTGCAGGATAAGTGTTAGGTTACTAGGCCACTTAACAGGCTATATAGTTCACTCCTACTATATACTCTTAATTATAACATAAAAAGCACCCCGTaaa < 1:6318838/100‑1 (MQ=255) aTTGCAGGATAAGTGTTAGGTTACTAGGCCACTTAACAGGCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACt < 1:372881/100‑1 (MQ=255) aTTGCAGGATAAGTGTTAGGTTACTAGGCCACTTAACAGGCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACt < 1:696890/100‑1 (MQ=255) tGCAGGATAAGTGTTAGGTTACTAGGCCACTTAACAGGCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCAccccccggcttgc < 1:1846791/100‑10 (MQ=37) tGCAGGATAAGTGTTAGGTTACTAGGCCACTTAACAGGCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACtat < 1:3953485/100‑1 (MQ=255) aCTTAACAGGCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATAtac > 1:1641798/1‑100 (MQ=255) cTTAACAGGCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATAtact < 1:976492/100‑1 (MQ=255) tAACAGGCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATAtactac > 1:4121394/1‑100 (MQ=255) aCAGGCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACgg < 1:2154761/100‑2 (MQ=255) ggCTATATAGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGgggg < 1:6131401/100‑1 (MQ=255) gatataGTGCACTCCTGCTATATACACTTAATTATAACATAAAAAGGACCCCGTAAACTATTAGACGGGAATGCTAAAGTCATATATACTACGGGGGagt < 1:3814821/99‑1 (MQ=38) atataGTTCACTCCTACTATATACACTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGGGGGagta < 1:3119567/100‑1 (MQ=255) actaTATACACTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGGGGGAGTAGTATGAAAACTagag > 1:127455/1‑97 (MQ=255) | AGTGAAGGGCAAAAAGGATATCAATTGCAGGATAAGTGTTAGGTTACTAGGCCACTTAACAGGCTATATAGTTCACTCCTACTATATACAGTTAATTATAACATAAAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGAGGGAGTAGTATGAAAACTATGC > NC_007793/2087874‑2088053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |