D3A :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	1,783,288	G→A	R401R (CGC→CGT)	SAUSA300_RS08885 ←	threonine‑‑tRNA ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	1,783,288	0	G	A	99.1%	643.5 / ‑5.8	229	R401R (CGC→CGT)	SAUSA300_RS08885	threonine‑‑tRNA ligase
Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (42/185); total (42/187)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

Only 100 of 232 total aligned reads displayed.

GTACTTTTCTTTATCTTCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACGCGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGTTGTAATCCTGATACAGCACC  >  NC_007793/1783192‑1783383

  aCTTTTCTTTATCTTCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGttt                                                                                            <  1:5191838/100‑1 (MQ=255)

   cTTTTCTTTATCTTCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTGCAACACGTTTg                                                                                           <  1:5080892/100‑1 (MQ=255)

    ttttCTTTATCTTCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAGCCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTgg                                                                                          <  1:5985464/100‑2 (MQ=255)

          ttATCTTCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAAttctt                                                                                    >  1:6282533/1‑100 (MQ=255)

                ttggggTCTCTATAACTTAATCTAAAGCTATAATCCTCGGAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTaa                                                                              >  1:1063886/4‑100 (MQ=255)

                tcggggTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTaa                                                                              >  1:3908712/4‑100 (MQ=255)

                tCAGGGTCTCTATAACTTAATCTGAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTaa                                                                              >  1:6358573/1‑100 (MQ=255)

                tCAGGGTCTCTATAACTTAATCTAATGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGATTGATTTCTTCTTTaa                                                                              >  1:2974389/1‑100 (MQ=255)

                tCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTaa                                                                              >  1:5616517/1‑100 (MQ=255)

                tCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTaa                                                                              >  1:1412711/1‑100 (MQ=255)

                tCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTaa                                                                              >  1:6421094/1‑100 (MQ=255)

                tCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTaa                                                                              >  1:5961699/1‑100 (MQ=255)

                acAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTaa                                                                              >  1:2125758/2‑100 (MQ=255)

                 tcgggTCTCTATAACTTAATCTAAAGCTATAATCCACGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAAt                                                                             >  1:3797803/3‑100 (MQ=255)

                    ggTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTg                                                                          <  1:1013455/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAGTCCTCGAAACCAAAGTCTTTATACGCATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:466983/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGacc                                                                       <  1:1193560/100‑3 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:4573708/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:3730745/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:4388924/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:3614859/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:3711050/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:3422972/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:5333898/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:5865621/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:1966526/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:1775802/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:6091968/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:6251766/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:1560502/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:1483709/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:6399192/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:6600734/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATc                                                                       <  1:801243/100‑1 (MQ=255)

                       ctctATAACTTAATCTAAAGCTATAATCCTCGAAAACAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTGCTTTAATTTGATc                                                                       <  1:4340246/100‑1 (MQ=255)

                        tctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCa                                                                      <  1:5370168/100‑1 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACTAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTGGATCAg                                                                     >  1:4753169/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACTACACGTTTGAATTCTTCTTTAATTTGATCAg                                                                     >  1:4203238/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAg                                                                     >  1:2625706/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAg                                                                     >  1:83390/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAg                                                                     >  1:3223950/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAg                                                                     <  1:735121/100‑1 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAg                                                                     >  1:1308213/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAg                                                                     >  1:5738567/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATCTGATCAg                                                                     >  1:1135458/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATCTGACCAg                                                                     >  1:2865773/1‑100 (MQ=255)

                         ctATAACTTAATCTAAAACTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATCTGATCAg                                                                     >  1:2932431/1‑100 (MQ=255)

                          tataACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAgg                                                                    <  1:4468459/100‑1 (MQ=255)

                          tataACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAgg                                                                    <  1:5066397/100‑1 (MQ=255)

                          tataACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAgg                                                                    <  1:1087642/100‑1 (MQ=255)

                          tataACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAgg                                                                    <  1:3783488/100‑1 (MQ=255)

                           ataACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAggc                                                                   <  1:4924865/100‑2 (MQ=255)

                           ataACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAgat                                                                   >  1:3569056/1‑98 (MQ=255)

                           ataACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATCTGATCAgat                                                                   >  1:3179811/1‑98 (MQ=255)

                            taACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACGCATCAATAATCATGTTTACAACGCGTTTGAATTCTTCTTTAATTTGATCAGGtg                                                                  <  1:2031094/100‑2 (MQ=255)

                            taACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAggcg                                                                  <  1:931628/100‑3 (MQ=255)

                             aaCTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCg                                                                 <  1:1989089/100‑1 (MQ=255)

                              aCTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAggggct                                                                <  1:265437/100‑5 (MQ=255)

                                 tAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACa                                                             <  1:1150628/100‑1 (MQ=255)

                                  aaacTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAAAACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACag                                                            <  1:5856047/97‑2 (MQ=255)

                                  aaTCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACaa                                                            <  1:167797/100‑1 (MQ=255)

                                  aaTCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACaa                                                            <  1:1734893/100‑1 (MQ=255)

                                  aaTCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACaa                                                            <  1:5295010/100‑1 (MQ=255)

                                  aaTCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACaa                                                            <  1:5363649/100‑1 (MQ=255)

                                  aaTCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACaa                                                            <  1:5386172/100‑1 (MQ=255)

                                  aaTCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACaa                                                            <  1:2269899/100‑1 (MQ=255)

                                  aaTCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACaa                                                            <  1:5569282/100‑1 (MQ=255)

                                       aaaGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGata                                                       >  1:446048/1‑100 (MQ=255)

                                       aaaGCTATAATCCTCGAAACCAAAGCCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGATCggaagagcaca                                                       >  1:6584651/1‑90 (MQ=255)

                                          gCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGatatag                                                    <  1:3886830/100‑3 (MQ=255)

                                          gCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATAtgt                                                    <  1:2445773/100‑1 (MQ=255)

                                           cTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATAtgtg                                                   <  1:3928929/100‑1 (MQ=255)

                                           cTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATAtgtg                                                   <  1:5780044/100‑1 (MQ=255)

                                             ataATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTACTTTAATTTGATCAGGTCGAACAAAGATAtgtgca                                                 <  1:3654851/100‑3 (MQ=255)

                                                         aCCAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTc                                     <  1:3512022/100‑1 (MQ=255)

                                                           cAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCag                                   <  1:1628868/100‑2 (MQ=255)

                                                           cAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCaa                                   <  1:235970/100‑2 (MQ=255)

                                                           cAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCAt                                   <  1:746112/100‑1 (MQ=255)

                                                           cAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCAt                                   <  1:1096362/100‑1 (MQ=255)

                                                           cAAAGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCAt                                   <  1:5042038/100‑1 (MQ=255)

                                                              aGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATAcc                                <  1:2298700/100‑1 (MQ=255)

                                                              aGTCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATAcc                                <  1:5162162/100‑1 (MQ=255)

                                                                tCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTGTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCAc                              <  1:6017915/100‑1 (MQ=255)

                                                                tCTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCCTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCAc                              <  1:4357346/100‑1 (MQ=255)

                                                                 cTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCatg                             <  1:6499506/100‑3 (MQ=255)

                                                                 cTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCAca                             <  1:404735/100‑2 (MQ=255)

                                                                 cTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACg                             <  1:915322/100‑1 (MQ=255)

                                                                 cTTTATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACg                             <  1:471442/100‑1 (MQ=255)

                                                                  tttATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACgg                            <  1:4107735/100‑2 (MQ=255)

                                                                  tttATACACATCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGa                            <  1:2948279/100‑1 (MQ=255)

                                                                         acaTCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGtt                     <  1:3839259/100‑1 (MQ=255)

                                                                         acaTCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGtt                     <  1:2756854/100‑1 (MQ=255)

                                                                           aTCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGTTGt                   <  1:6217187/100‑1 (MQ=255)

                                                                           aTCAATAATCATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGTTGt                   <  1:2150469/100‑1 (MQ=255)

                                                                                    cATGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATAGGTGAATCATTTAAAGTCATACCACGAACACGTTGTAATCCTggg          <  1:6050307/100‑3 (MQ=255)

                                                                                      tGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGTTGTAATCCTGATAc        <  1:5023568/100‑1 (MQ=255)

                                                                                      tGTTTACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTAGAACAAAGATATGTGAATCATTTAAAGTCATAGCACGAACACGTTGTAATCCTGATAc        <  1:5488300/100‑1 (MQ=255)

                                                                                         ttACAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGTTGTAATCCTGATACAGc     <  1:2551468/100‑1 (MQ=255)

                                                                                           acaacaCGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGTTGTAATCCTGATACAGcac   <  1:6616793/100‑1 (MQ=255)

                                                                                            cAACACGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGTTGTAATCCTGATACAGcacc  <  1:3975706/100‑1 (MQ=255)

GTACTTTTCTTTATCTTCAGGGTCTCTATAACTTAATCTAAAGCTATAATCCTCGAAACCAAAGTCTTTATACACATCAATAATCATGTTTACAACGCGTTTGAATTCTTCTTTAATTTGATCAGGTCGAACAAAGATATGTGAATCATTTAAAGTCATACCACGAACACGTTGTAATCCTGATACAGCACC  >  NC_007793/1783192‑1783383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`