Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	1,664,751	A→T	intergenic (‑216/+61)	SAUSA300_RS08260 ← / ← SAUSA300_RS08265	superoxide dismutase/transcriptional repressor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	1,664,751	0	A	T	100.0%	18.9 / NA	9	intergenic (‑216/+61)	SAUSA300_RS08260/SAUSA300_RS08265	superoxide dismutase/transcriptional repressor
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (0/9);  total (0/9)

AATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAT  >  NC_007793/1664661‑1664793                                                                                           |                                           aataatTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATg                                  <  1:3755325/100‑1 (MQ=255) aataatTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATg                                  <  1:5530867/100‑1 (MQ=255) aataatTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATg                                  <  1:5822593/100‑1 (MQ=255) aataatTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATg                                  <  1:6634424/100‑1 (MQ=255)   taatTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATgag                                <  1:316395/100‑1 (MQ=255)   taatTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATgag                                <  1:6579761/100‑1 (MQ=255)                                aCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATGAGATTTATGCATACATCTGACCAAATGTGCa   <  1:56703/100‑1 (MQ=255)                                 cAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATGAGATTTATGCATACATCTGACCAAATGTGCAt  <  1:5144202/100‑1 (MQ=255)                                 cAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATTTAAA‑AAATGAGATTTATGCATACATCTGACCAAATGTGCAt  <  1:6562218/100‑1 (MQ=255)                                                                                           |                                           AATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAT  >  NC_007793/1664661‑1664793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑