Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	1,586,615	C→T	pseudogene (57/162 nt)	SAUSA300_RS07800 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	1,586,615	0	C	T	100.0%	11.3 / NA	6	pseudogene (57/162 nt)	SAUSA300_RS07800	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (4/2);  total (4/2)

AAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACAGCAATGGCATAAGCACAATCGCTAAGACTGTGAAGCACAGTACTGCTATTAATTAGCTTTTATATGTGTCGCTCATTTAATATC  >  NC_007793/1586521‑1586679                                                                                               |                                                                 aaaaGTATTCCTTATAAAATATGAATGTTGCGATACTTGCGAATCCCGCAATCGACCATGCAGTAGTGAAGTATAGAAACGGCATAAGTACAATTGCTag                                                             <  1:3082542/100‑2 (MQ=255)                               cGATACTTGCGAATCCCGCAATCGACCATGCAGTAGTGAAGTATAGAAACGGCATAAGTACAATTGCTAAGACTGTAAAGCACAGTACTGctactaggta                               <  1:4491382/100‑5 (MQ=255)                                                       aCCATGCAGTAGTGAAGTATAGAAACGGCATAAGTACAATTGCTAAGACTGTAAAGCACAGTACTGCTACTAGGTAGCTTTTATAAATGTTGCTCAtttt       >  1:1725451/1‑99 (MQ=255)                                                         cctGCAGTAGTGAAGTATAGAAACGGCATAAGTACAATTGCTAAGACTGTAAAGCACAGTACTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTat     >  1:87325/3‑100 (MQ=255)                                                         ccggcagTAGTGAAGTATAGAAACGGCATAAGTACAATTGCTAAGACTGTAAAGCACAGTACTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTat     >  1:77542/7‑100 (MQ=255)                                                            gcagTAGTGAAGTATAGAAACGGCATAAGTACAATTGCTAAGACTGTAAAGCACAGTACTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTattct  >  1:2811395/4‑97 (MQ=255)                                                                                               |                                                                 AAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACAGCAATGGCATAAGCACAATCGCTAAGACTGTGAAGCACAGTACTGCTATTAATTAGCTTTTATATGTGTCGCTCATTTAATATC  >  NC_007793/1586521‑1586679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑