| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,578,410 | T→C | K72K (AAA→AAG) | SAUSA300_RS07710 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,578,410 | 0 | T | C | 95.2% | 44.3 / ‑4.5 | 21 | K72K (AAA→AAG) | SAUSA300_RS07710 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (1/19); total (1/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 | |||||||||||
TTAACTTCTACCTTATCGCCTACTTTTAACCTAGCTTGTATATCTGCGCTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGTTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATAGTTCCTTGATGTAATTCTTTGTGTTGGT > NC_007793/1578315‑1578504 | cgatcTTCTACTTTATCGCCTACTTTTAACCTAGCTTGTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGActtgcttgg < 1:3456511/96‑2 (MQ=21) ttCTACTTTATCGCCTACTTTTAACCTAGCTTGTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCt < 1:3883195/100‑1 (MQ=255) ctttATCGCCTGCTTTTAACCTAGCTTGTATATCTGCACTATCAAATTTCATTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATAc < 1:3441368/98‑1 (MQ=21) tCGCCTGCTTTTAACCTAGCTTGTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAatat < 1:3651335/100‑1 (MQ=255) tCGCCTACTTTTAACCTAGCTTGTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAatat < 1:891206/100‑1 (MQ=255) ttttAACCTAGCTTGTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTg < 1:5097385/100‑1 (MQ=255) ttttAACCTAGCTTGTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTg < 1:4090214/100‑1 (MQ=255) tttAACCTAGCTTGTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTgg < 1:5760792/100‑2 (MQ=255) ccTAGCTTGTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATACAGAACTTGtcttct > 1:2450825/1‑100 (MQ=255) gTATATCTGCACTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTg < 1:412345/100‑1 (MQ=255) cacTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGtt < 1:5312559/98‑1 (MQ=255) tCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGt < 1:1523554/100‑1 (MQ=255) cTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTa < 1:5684622/100‑1 (MQ=255) aataatAAGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTc < 1:4103600/100‑1 (MQ=255) ataaGTCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTg < 1:2355152/100‑1 (MQ=255) tCGGAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGATCTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTgcg < 1:3987297/100‑3 (MQ=18) ggAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTgcgtt < 1:1264401/100‑5 (MQ=18) ggAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTgcgtt < 1:6587635/100‑5 (MQ=18) gAATTTTCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTgcgggg < 1:787369/100‑6 (MQ=18) tttCAATGACTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTgcgtttcttg < 1:763062/100‑10 (MQ=17) ccgatcTTGTTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAAGTGTTCCTTGGTGCGTTTCTTTgtgt < 1:6490527/95‑1 (MQ=17) aCTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTGCGTTTCTTTGTGTTGGt < 1:4682882/100‑1 (MQ=17) | TTAACTTCTACCTTATCGCCTACTTTTAACCTAGCTTGTATATCTGCGCTATCAAATTTCTTTTTGAATAATAAGTCGGAATTTTCAATGACTTGTTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATAGTTCCTTGATGTAATTCTTTGTGTTGGT > NC_007793/1578315‑1578504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |