| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,154,585 | T→C | intergenic (+388/‑166) | SAUSA300_RS05695 → / → SAUSA300_RS05700 | fibrinogen‑binding protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,154,585 | 0 | T | C | 90.9% | 119.8 / 2.8 | 77 | intergenic (+388/‑166) | SAUSA300_RS05695/SAUSA300_RS05700 | fibrinogen‑binding protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/6); new base C (2/68); total (3/74) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.30e-01 | |||||||||||
CTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGC > NC_007793/1154489‑1154676 | cTTATAACAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGa < 1:5887995/100‑1 (MQ=18)cTTATAACAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGa < 1:4503484/100‑1 (MQ=18) aCAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCCCCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTgg < 1:1460394/100‑1 (MQ=17) aCAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTgg < 1:3655574/100‑1 (MQ=18) aCAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTgg < 1:4743138/100‑1 (MQ=18) aCAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTgg < 1:3076906/100‑1 (MQ=18) cAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTgag < 1:1363140/100‑3 (MQ=18) cAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGc < 1:4813823/100‑1 (MQ=18) cAAGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGACCAACACAGAAGCTgga < 1:2948949/100‑2 (MQ=17) aaGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCGAGTTGGGGTGGGGCCCAACACAGAAGCTGGcc < 1:1750006/100‑2 (MQ=18) aaGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGct < 1:4480504/100‑2 (MQ=18) aaGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGcc < 1:611775/100‑2 (MQ=18) aaGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCg < 1:3479156/100‑1 (MQ=18) aGTTTTTTCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTgggca < 1:340828/100‑4 (MQ=17) tttttCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATTCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCggtta < 1:3369648/100‑5 (MQ=18) tttttCAATACTCGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCgggta < 1:4994358/100‑5 (MQ=17) ttCAATACTCGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTc < 1:3769597/100‑1 (MQ=17) cccaacaGGGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGTTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:571006/98‑1 (MQ=14) cccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:779638/98‑1 (MQ=14) cccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:3590580/98‑1 (MQ=14) cccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:3470303/98‑1 (MQ=14) cccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:608471/98‑1 (MQ=14) cccaacaGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGc < 1:160865/98‑1 (MQ=255) cccaacaGAGAAAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGc < 1:3777513/98‑1 (MQ=14) gaaacaGAGAGAAATAGGATCCCCAATTTCAACAGACAATGCAAGTGGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:1475617/98‑1 (MQ=11) ccaacaGGGAGAAATAGGATCACCAATTTCAACAGAAAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:3770786/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCTCCAATTTCAACAGACAATGCAAGTGGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:3453392/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACGGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:4364421/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:4610487/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:228108/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:551721/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:4172940/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:3082300/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:4695688/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:4465285/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:1491569/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGAGGTGGGGCCCAACACAGAATCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:6189436/99‑1 (MQ=14) ccaacaGAGAGAAATAGGATCACCAATTTCAACAGACAAAGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:3380607/99‑1 (MQ=17) ccaacaGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCa < 1:699848/99‑1 (MQ=255) ccaacaGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCa < 1:984162/99‑1 (MQ=255) ccaacaGAGAGAAATAGGATCACCAATGCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGGCAGCTTACAAAAATGTGCa < 1:4076604/99‑1 (MQ=255) ccaacaGAGAGAAATAGGACCTCCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:6102849/99‑1 (MQ=14) ccaacaGAGAGAAACAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:4884660/99‑1 (MQ=14) ccaacaGAAAGAAATAGGATCTCCAATTTCAACAGTCAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa < 1:2348273/99‑1 (MQ=14) acaacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCa > 1:5112859/1‑100 (MQ=14) caacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCag < 1:3783591/100‑2 (MQ=14) caacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCag < 1:2414600/100‑2 (MQ=14) caacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCaa < 1:2663104/100‑1 (MQ=14) caacaGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCaa < 1:3825022/100‑1 (MQ=255) aacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGccgt < 1:1940492/100‑4 (MQ=14) aacaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCatg < 1:6628901/100‑3 (MQ=14) acaGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGt < 1:2402795/100‑1 (MQ=14) gagagaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAgggtt < 1:3454470/100‑5 (MQ=14) gagagaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTgg < 1:1662257/100‑1 (MQ=14) gagagaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTgg < 1:796711/100‑1 (MQ=14) agagaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGc < 1:740532/100‑1 (MQ=14) gagaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCg < 1:1636974/100‑1 (MQ=14) gagaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCg < 1:710106/100‑1 (MQ=14) agaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCgg < 1:3286751/100‑1 (MQ=14) agaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCgg < 1:4115258/100‑1 (MQ=14) agaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCgg < 1:32249/100‑1 (MQ=14) agaAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCgg < 1:3086342/100‑1 (MQ=14) gaAATAGGATCACCAATTTCAAAAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCggg < 1:2420176/100‑1 (MQ=14) aaTTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATagag < 1:2907341/100‑1 (MQ=255) tcaacagACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAAt < 1:2403706/99‑1 (MQ=11) caacagACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAAta < 1:1485711/100‑2 (MQ=11) caacagACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAAta < 1:1651552/100‑2 (MQ=11) caaTGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGCCAGCTTAC‑AAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAAcccc > 1:6304798/1‑100 (MQ=255) aaTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGatcacc < 1:3959325/100‑6 (MQ=14) aaTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGatcaag < 1:2268062/100‑6 (MQ=14) aTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCa < 1:2428156/100‑1 (MQ=14) aTGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCa < 1:5537946/100‑1 (MQ=14) cAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAAtt < 1:1767163/100‑1 (MQ=14) gTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAAttcca < 1:4727177/100‑4 (MQ=14) tggggCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGTGGGGCCCCAACAGAGAGAAATAGGATCACCAATTCCaacaaaca < 1:2496121/99‑1 (MQ=11) tggcccAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTCCAACAAACAAt > 1:6430272/4‑100 (MQ=14) gcccAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGc < 1:2428562/99‑1 (MQ=14) | CTTATAACAAGTTTTTTCAATACTCGTGGGGCCACAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGC > NC_007793/1154489‑1154676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |