Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 1,090,055 T→C I136I (ATT→ATC)  SAUSA300_RS05355 → pyruvate dehydrogenase E1 component subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,090,0550TC100.0% 1258.7 / NA 463I136I (ATT→ATC) SAUSA300_RS05355pyruvate dehydrogenase E1 component subunit beta
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (435/28);  total (435/28)

Only 100 of 463 total aligned reads displayed.

TTCAGGCGGTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATTTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGACCCAG  >  NC_007793/1089959‑1090149
                                                                                                |                                                                                              
ttgccctggTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTa                                                                                             >  1:2276326/8‑100 (MQ=255)
 tCAGGCGGTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAg                                                                                            >  1:5072749/1‑100 (MQ=255)
 tCAGGCGGTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGAGGCGTACACACACCAGAATTACACGCAGATAACTTCGAAGGTATCTTAg                                                                                            >  1:2621407/1‑100 (MQ=255)
   aGGCGGTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCt                                                                                          >  1:5189128/1‑100 (MQ=255)
    ggCGGTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTc                                                                                         >  1:6499790/1‑100 (MQ=255)
    ggCGGTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTc                                                                                         >  1:4749446/1‑100 (MQ=255)
    ggCGGTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTc                                                                                         >  1:461516/1‑100 (MQ=255)
           cTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTcc                                                                                  >  1:6603570/1‑100 (MQ=255)
           cTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTcc                                                                                  <  1:5953409/100‑1 (MQ=255)
             aaaaCTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAg                                                                                >  1:5593161/1‑100 (MQ=255)
                ccTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGAATCTTAGCTCAATCTCCAGGTc                                                                             >  1:1791215/2‑100 (MQ=255)
                aCTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTc                                                                             >  1:931617/1‑100 (MQ=255)
                 taaccccTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGATcg                                                                            >  1:3146361/6‑99 (MQ=255)
                 gtGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCt                                                                            >  1:4212278/2‑100 (MQ=255)
                 cTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCt                                                                            >  1:4049506/1‑100 (MQ=255)
                 cTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGATcg                                                                            >  1:332296/1‑99 (MQ=255)
                 cTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGATcg                                                                            >  1:2899694/1‑99 (MQ=255)
                 atGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCt                                                                            >  1:5924292/2‑100 (MQ=255)
                  tGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTa                                                                           >  1:3278333/1‑100 (MQ=255)
                  tGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGATcgg                                                                           >  1:293512/1‑98 (MQ=255)
                  tGCACCTGTAACAATTCGTAGCCCATTCGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTa                                                                           >  1:1697106/1‑100 (MQ=255)
                   gCACCTGTAACAATTCGTATCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGTAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTaa                                                                          <  1:4357760/100‑1 (MQ=255)
                   gCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTaa                                                                          >  1:5453318/1‑100 (MQ=255)
                   gCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTaa                                                                          <  1:5997093/100‑1 (MQ=255)
                   gCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTaa                                                                          >  1:194029/1‑100 (MQ=255)
                   gCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTaa                                                                          >  1:1995677/1‑100 (MQ=255)
                   gCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTaa                                                                          >  1:2351554/1‑100 (MQ=255)
                   gCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCCTAGCTCAATCTCCAGATcgga                                                                          >  1:5764463/1‑97 (MQ=255)
                    taCCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGTAATCTTAGCTCAATCTCCAGGTCTaga                                                                         >  1:4581569/2‑98 (MQ=255)
                    gcccTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTaaa                                                                         >  1:2975342/3‑100 (MQ=255)
                    gaCCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGATcggaa                                                                         >  1:6357868/2‑96 (MQ=255)
                      ccTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAgg                                                                       >  1:5565108/1‑100 (MQ=255)
                         gTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGgttg                                                                    >  1:5175225/1‑100 (MQ=255)
                         gTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGgttg                                                                    >  1:4114953/1‑100 (MQ=255)
                         gTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGATcggaagagca                                                                    >  1:1323644/1‑91 (MQ=255)
                           agcAATTCGTAGCCCATTTGGTGGTGGTGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGgttgtt                                                                  <  1:493092/98‑1 (MQ=255)
                               cctCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTc                                                              >  1:4668290/3‑100 (MQ=255)
                                  ctaggCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCtt                                                           >  1:1215932/5‑100 (MQ=255)
                                  cGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAGGGTTGTTATTCCtt                                                           >  1:4837157/1‑100 (MQ=255)
                                  cGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCtt                                                           >  1:2378228/1‑100 (MQ=255)
                                   gTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTc                                                          >  1:6579285/1‑100 (MQ=255)
                                   gTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGATGTTATTCCTTc                                                          >  1:6466165/1‑100 (MQ=255)
                                    tAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCa                                                         >  1:6100050/1‑100 (MQ=255)
                                    tAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCa                                                         >  1:2587837/1‑100 (MQ=255)
                                     aGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAg                                                        >  1:5243023/1‑100 (MQ=255)
                                     aGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAg                                                        >  1:3628628/1‑100 (MQ=255)
                                     aGCCCATTTGGTGGTGGCGTACACACAACAGAATTACACGCAGATAACTTAGAAGGTCTCTTAGCTCAATCTCCAGGTCTAAAGGTTGGTATTCCTTCAg                                                        >  1:1034100/1‑100 (MQ=255)
                                     aGCCCATTTGGTGGCGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAg                                                        >  1:812533/1‑100 (MQ=255)
                                                    cccGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGa                                         >  1:1143651/3‑100 (MQ=255)
                                                     ttccgatctcacCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGaa                                        <  1:5783558/91‑1 (MQ=255)
                                                     gCGTACACACTCCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGaa                                        <  1:3502388/100‑1 (MQ=255)
                                                      cGTACACACTCCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGaaa                                       <  1:6550571/100‑1 (MQ=255)
                                                      cGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTACAGGTTGTTATTCCTTCAGGCCCATACGATGCGaaa                                       >  1:840752/1‑100 (MQ=255)
                                                       gTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAg                                      >  1:1397081/1‑100 (MQ=255)
                                                        tACACACACCAGAATTACACGCAGATAACTTAGAAGGCATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAgg                                     >  1:3842485/1‑100 (MQ=255)
                                                        cacacacacCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAgg                                     >  1:6291859/2‑100 (MQ=255)
                                                         acgcacacCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGt                                    >  1:1527468/4‑100 (MQ=255)
                                                          cacacacCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGACGCGAAAgatc                                   >  1:5824494/1‑97 (MQ=255)
                                                           ccacacCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGttt                                  >  1:5909675/2‑100 (MQ=255)
                                                            cacacCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTtta                                 >  1:5723426/1‑100 (MQ=255)
                                                            cacacCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTtta                                 >  1:4708322/1‑100 (MQ=255)
                                                              cacCAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTttatt                               >  1:6178177/1‑100 (MQ=255)
                                                                ccAGAATTACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTaa                             >  1:5644098/1‑100 (MQ=255)
                                                                      ttACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATttctt                       >  1:3753807/1‑100 (MQ=255)
                                                                       tACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATttcttc                      >  1:2400812/1‑100 (MQ=255)
                                                                       tACACGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATttcttc                      >  1:3918379/1‑100 (MQ=255)
                                                                       gacacGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATttcttc                      >  1:2824613/2‑100 (MQ=255)
                                                                        acacGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTtcttct                     >  1:4328949/1‑100 (MQ=255)
                                                                        acacGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATACGAAAGGTTTATTAATTtcttct                     >  1:1873642/1‑100 (MQ=255)
                                                                          ccGCAGATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGTCCCATACGATGCGAAAGGTTTATTAATTTCTTCTAt                   >  1:1640074/2‑100 (MQ=255)
                                                                              ctctAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGa               >  1:145142/4‑100 (MQ=255)
                                                                              aGATAACTTAGAAGGTACCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGa               >  1:5280132/1‑100 (MQ=255)
                                                                               gATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTGAAGGCTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGaa              >  1:278051/1‑100 (MQ=255)
                                                                               gATAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGaa              >  1:2059669/1‑100 (MQ=255)
                                                                               actAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGaa              >  1:1254075/3‑100 (MQ=255)
                                                                                ctAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGTAAGGTTTATTAATTTCTTCTATTAGAAg             >  1:3927608/2‑100 (MQ=255)
                                                                                 tcaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGt            >  1:6420078/3‑100 (MQ=255)
                                                                                 tAACTTGGACGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGt            >  1:3711349/1‑100 (MQ=255)
                                                                                 tAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGt            >  1:1173986/1‑100 (MQ=255)
                                                                                 tAACTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGt            >  1:5400240/1‑100 (MQ=255)
                                                                                  aaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTa           >  1:1110226/1‑100 (MQ=255)
                                                                                  aaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTa           >  1:2112514/1‑100 (MQ=255)
                                                                                  aaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTa           >  1:2205240/1‑100 (MQ=255)
                                                                                  aaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTa           >  1:2459195/1‑100 (MQ=255)
                                                                                  aaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTa           >  1:6254449/1‑100 (MQ=255)
                                                                                  aaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTa           >  1:708722/1‑100 (MQ=255)
                                                                                  aaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTa           >  1:4490708/1‑100 (MQ=255)
                                                                                  aaCTTAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTa           >  1:4966813/1‑100 (MQ=255)
                                                                                      tAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGa       >  1:1472942/1‑100 (MQ=255)
                                                                                      tAGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGa       >  1:1755051/1‑100 (MQ=255)
                                                                                       aGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGAc      >  1:3954331/1‑100 (MQ=255)
                                                                                       aGAAGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGAc      >  1:2146274/1‑100 (MQ=255)
                                                                                         taGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGAccc    >  1:3015934/2‑100 (MQ=255)
                                                                                         aaGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGAccc    >  1:671314/1‑100 (MQ=255)
                                                                                          aGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGTTGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGACCCa   >  1:5017303/1‑100 (MQ=255)
                                                                                          aGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGACCCa   >  1:3366233/1‑100 (MQ=255)
                                                                                          aGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGACCCa   >  1:5862181/1‑100 (MQ=255)
                                                                                          aGGTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGACCCa   >  1:5519946/1‑100 (MQ=255)
                                                                                          aGGTATCTTAGCTCAATCTCCAGGTCTAAAGGATGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGACCCa   >  1:3563460/1‑100 (MQ=255)
                                                                                           ggTATCTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGACCCAg  >  1:5309410/1‑100 (MQ=255)
                                                                                                |                                                                                              
TTCAGGCGGTACTAAAACTGCACCTGTAACAATTCGTAGCCCATTTGGTGGTGGCGTACACACACCAGAATTACACGCAGATAACTTAGAAGGTATTTTAGCTCAATCTCCAGGTCTAAAGGTTGTTATTCCTTCAGGCCCATACGATGCGAAAGGTTTATTAATTTCTTCTATTAGAAGTAATGACCCAG  >  NC_007793/1089959‑1090149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑