| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 99,032 | G→C | R22T (AGA→ACA) | SAUSA300_RS00470 → | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 99,032 | 0 | G | C | 95.0% | 43.9 / ‑4.4 | 20 | R22T (AGA→ACA) | SAUSA300_RS00470 | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (16/3); minor base T (1/0); total (17/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 | |||||||||||
ATTAAACATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGAGAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTATAGGTGGTTTGTATGATAATAGATTATTGGTCAAGGCGACTAAAAGTG > NC_007793/98938‑99127 | aTTAAACATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGAcgagaa < 1:1112647/100‑1 (MQ=255) aaCATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACTAGAAAgat > 1:4914981/1‑100 (MQ=255) aTAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACGAGAAAgatcgg > 1:131839/1‑97 (MQ=255) tAAAACTGAAGGAGCGATTACAATGACGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGTGTAAGACaataaggagatcg > 1:576910/1‑95 (MQ=255) aaaaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGATAAGAAAgatcggaa > 1:475180/1‑95 (MQ=255) aaaaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAgatggcgg > 1:5731905/1‑96 (MQ=255) aaaaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATgg > 1:777445/1‑100 (MQ=255) caCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGTAAGAAGATCGga > 1:3506270/2‑100 (MQ=255) aaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAgacgaagatc > 1:676916/1‑95 (MQ=255) aaGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGgagatcg > 1:1566082/1‑97 (MQ=255) aCAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGCTGGGAGAATATATtatttatt > 1:1113433/1‑100 (MQ=255) aCAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATtatttatt > 1:5461740/1‑100 (MQ=255) aCAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATtatttatt > 1:947460/1‑100 (MQ=255) agaTGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGTTGGGAGAATATATTATttatta > 1:1915069/3‑100 (MQ=255) gACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGc > 1:1849422/1‑100 (MQ=255) aCTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCg < 1:2031792/100‑1 (MQ=255) aagaaagaTGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGtag > 1:5914933/1‑98 (MQ=255) aagaaagaTGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGACGGCgcag > 1:5362269/1‑97 (MQ=255) gaaagaTGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGtt < 1:6079746/100‑1 (MQ=255) aaTTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTATAGGTGGTTTGTATGATAATAGATTATTGGTCa < 1:4232357/100‑1 (MQ=255) aaGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTATAGGTGGTTTGTATGATAATAGATTATTGGTCAAGGCGACTAAAAGTg > 1:6481334/1‑100 (MQ=255) | ATTAAACATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGAGAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTATAGGTGGTTTGTATGATAATAGATTATTGGTCAAGGCGACTAAAAGTG > NC_007793/98938‑99127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |