| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 97,315 | C→T | intergenic (‑193/+106) | SAUSA300_RS00455 ← / ← SAUSA300_RS00460 | hypothetical protein/tRNA‑dihydrouridine synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 97,315 | 0 | C | T | 97.5% | 102.0 / NA | 40 | intergenic (‑193/+106) | SAUSA300_RS00455/SAUSA300_RS00460 | hypothetical protein/tRNA‑dihydrouridine synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (1/38); minor base A (1/0); total (2/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTCTGAGTTAAACGATATCCTGATGTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGCATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGTTAAATTGGGAAATATCAT > NC_007793/97237‑97399 | tttCTGGGTTAAACGATATCCTAATGTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATc < 1:4341870/100‑1 (MQ=255) tGATGTATTTTTAATTATGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCt < 1:309402/100‑1 (MQ=255) gATGTGTTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTa < 1:1603426/100‑1 (MQ=255) gTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGt < 1:5446546/100‑1 (MQ=255) gTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGt > 1:5229034/1‑100 (MQ=255) gTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGt < 1:4871092/100‑1 (MQ=255) gTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGt < 1:3726691/100‑1 (MQ=255) gTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGt < 1:2585283/100‑1 (MQ=255) gTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCAGCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGt < 1:4435782/100‑1 (MQ=255) aTTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAg < 1:3361811/100‑1 (MQ=255) ttttAATTTTGCACCATTTCTAAAAGGATAAGTGACATAATTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGaa < 1:597728/100‑1 (MQ=255) ttttAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGaa < 1:2892950/100‑1 (MQ=255) ttttAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGaa < 1:2966732/100‑1 (MQ=255) ttttAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGaa < 1:636274/100‑1 (MQ=255) ttttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGtt < 1:631666/100‑1 (MQ=255) tttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTc < 1:5206299/100‑1 (MQ=255) tttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTc < 1:547365/100‑1 (MQ=255) tttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTc < 1:577455/100‑1 (MQ=255) tttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTc < 1:2350414/100‑1 (MQ=255) ttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCa < 1:4319750/100‑1 (MQ=255) ttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCa < 1:4331217/100‑1 (MQ=255) ttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCa < 1:1792263/100‑1 (MQ=255) ttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCa < 1:2946378/100‑1 (MQ=255) ttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCa < 1:173223/100‑1 (MQ=255) ttGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCa < 1:2426903/100‑1 (MQ=255) tGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCac < 1:2573624/100‑2 (MQ=255) gCACCATTTCCAAAAGGATAAGAGACCTAAGTAAAAAGGAATCATCGGGAGCTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAAt > 1:4131506/1‑100 (MQ=255) ttCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGtt < 1:572502/100‑1 (MQ=255) ttCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGtt < 1:882131/100‑1 (MQ=255) ttCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGtt < 1:1872470/100‑1 (MQ=255) ttCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGtt < 1:1360528/100‑1 (MQ=255) tCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATTCCTAAGTAGAAAGTGTTCAATCCGTGTTa < 1:667206/100‑1 (MQ=255) tCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCgtgtag < 1:3588291/100‑3 (MQ=255) tCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGTTa < 1:4250847/100‑1 (MQ=255) tCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGTTa < 1:3023959/100‑1 (MQ=255) tCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGTTa < 1:6528775/100‑1 (MQ=255) tCCAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGTTa < 1:1265651/100‑1 (MQ=255) ccAAAAGGATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGTTaa < 1:5607444/100‑1 (MQ=255) ggATAAGTGACATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTGGAAAGTGTTCAATCCGTGTTAAATTggg < 1:6600641/100‑1 (MQ=255) aCATAAGTAAAAAGGTATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGTTAAATTGGGAAATatcat < 1:5023407/100‑1 (MQ=255) | TTTCTGAGTTAAACGATATCCTGATGTATTTTTAATTTTGCACCATTTCCAAAAGGATAAGTGACATAAGTAAAAAGGCATCATCGGGAGTTATCCTATCAGGAAAACCAAGATAATACCTAAGTAGAAAGTGTTCAATCCGTGTTAAATTGGGAAATATCAT > NC_007793/97237‑97399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |