| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 774,306 | C→T | T101M (ACG→ATG) | SAUSA300_RS03755 → | aminodeoxychorismate lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 774,306 | 0 | C | T | 94.1% | 84.9 / ‑2.2 | 36 | T101M (ACG→ATG) | SAUSA300_RS03755 | aminodeoxychorismate lyase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (28/4); minor base A (2/0); total (32/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01 | |||||||||||
AACGATAGTGTCACCTTTACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAACGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCAGAGGACGG > NC_007793/774211‑774372 | aaCGATAGTGTCACCTTTACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACa > 1:79163/1‑100 (MQ=255) cACCTTTACCTGTGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCTAACTTTTATAAAAAATAAAATGACAGATCGGAAgag > 1:5291697/1‑98 (MQ=255) cACCTTTACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATAACAGAACGAAAGCa > 1:4836576/1‑100 (MQ=255) cACCTTTACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAACGACAGagatcggaag > 1:6156451/1‑91 (MQ=255) tttACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTa > 1:5590420/1‑100 (MQ=255) ttACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAGATGACAGATCGgaaaagcacac > 1:4000825/1‑92 (MQ=255) ttACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAg > 1:2330039/1‑100 (MQ=255) ttACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAg > 1:3224693/1‑100 (MQ=255) tACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGAAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGc > 1:6145881/1‑100 (MQ=255) gaCCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAACCCAACTTTTATAAAAAATAAAGTGACAGATCGGAAgagcacacg > 1:2085358/2‑92 (MQ=255) aCCTGAGAAAAGTAGTTTTACAGTAAAAGGTGAAGTGTTGCCCAAAGAAGATAATCCAACTAGAAGAAAAAAAAAAGTGACAGATCGTAAgagcacacgt > 1:1969137/1‑91 (MQ=255) aCCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAATAGACAGATCGGAAgagcacacgt > 1:4875212/1‑91 (MQ=255) aCCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAAAGACAGATCGGAAgagcacacgt > 1:3681579/1‑91 (MQ=255) gagaAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGcacaca > 1:5138271/1‑100 (MQ=255) gtTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATTAAAc < 1:265519/100‑1 (MQ=255) gtTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAAc < 1:2101613/100‑1 (MQ=255) gtTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCAGGAAAc < 1:711485/100‑1 (MQ=255) gtTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCACGAAAc < 1:4330326/100‑1 (MQ=255) tACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGAt > 1:4600242/1‑100 (MQ=255) aCAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGAtt > 1:5783479/1‑100 (MQ=255) aCAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCAAGAAACAGAtc > 1:2121513/1‑99 (MQ=255) aGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCAGGAAACAGAtcgg > 1:1915960/1‑97 (MQ=255) cttGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCa > 1:4593230/2‑100 (MQ=255) ttGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCag > 1:3682714/1‑100 (MQ=255) tGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAACGGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCaga > 1:5426264/1‑100 (MQ=255) tGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCaga > 1:3016840/1‑100 (MQ=255) tGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCaga > 1:5887488/1‑100 (MQ=255) tGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCaga > 1:5379639/1‑100 (MQ=255) tGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCaga > 1:5270191/1‑100 (MQ=255) gCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCagag > 1:1330524/1‑100 (MQ=255) gCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCagag > 1:5282653/1‑100 (MQ=255) gCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCagag > 1:594603/1‑100 (MQ=255) gCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCagag > 1:178829/1‑100 (MQ=255) gCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCagag > 1:1612065/1‑100 (MQ=255) cccAAAGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCAGAgg > 1:6375569/1‑100 (MQ=255) aaGTAGTTAATCCAACTTTTATAAAAAATAAAATGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCAGAGGACgg > 1:4128653/1‑100 (MQ=255) | AACGATAGTGTCACCTTTACCTGAGAAAAGTAGTTTTACAGCAAAATTTCAAGTGTTGCCCAAAGTAGTTAATCCAACTTTTATAAAAAATAAAACGACAGAACGAAAGCATTTAGCACACAATCATGAAACAGATTTAATATTGCTAACTTCAGAGGACGG > NC_007793/774211‑774372 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |