Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 76,402 C→T S45L (TCA→TTA)  SAUSA300_RS00345 → transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00779376,4020CT100.0% 235.4 / NA 137S45L (TCA→TTA) SAUSA300_RS00345transposase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (133/4);  total (133/4)

Only 100 of 137 total aligned reads displayed.

TTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCT  >  NC_007793/76306‑76474
                                                                                                |                                                                        
ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAAc                                                                       >  1:4806923/1‑100 (MQ=12)
 tATCACTGTAGCCGGTGGCTACTATCTAAGATATGCATCGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACg                                                                      >  1:5646995/1‑100 (MQ=11)
  aTCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACgg                                                                     >  1:3223717/1‑100 (MQ=12)
   gcACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGt                                                                    >  1:3772254/2‑100 (MQ=12)
    cACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTc                                                                   >  1:583639/1‑100 (MQ=12)
       tGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTat                                                                <  1:4778488/100‑2 (MQ=12)
             gcatGGCTACTATCTAAGATCTGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTga                                                          >  1:3868220/4‑99 (MQ=11)
             ccctGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTga                                                          >  1:4539096/4‑99 (MQ=11)
             ccatGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGCCTagatcgga                                                          >  1:261941/4‑93 (MQ=11)
              cttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgag                                                         >  1:930581/2‑98 (MQ=11)
              cttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgag                                                         >  1:5143440/2‑98 (MQ=11)
              cctGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAACGTTgag                                                         >  1:856048/3‑98 (MQ=11)
              attGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaa                                                         >  1:1069786/2‑92 (MQ=11)
              attGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaa                                                         >  1:2752975/2‑92 (MQ=11)
               ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCCTCATTTAACGGTCTAGCGTTGAGt                                                        >  1:4742911/1‑100 (MQ=11)
               ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGt                                                        >  1:4027755/1‑100 (MQ=11)
               ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGt                                                        >  1:4535902/1‑100 (MQ=11)
               ctGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgaga                                                        >  1:5076083/2‑97 (MQ=11)
               ctGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGt                                                        >  1:6611273/2‑100 (MQ=11)
                tGGCTGCTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:6459776/1‑100 (MQ=11)
                tGGCTACTATCTAAGATCTGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTATCGGTCTagatcggaaga                                                       >  1:6478849/1‑90 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAATGGAACGTGGTGTAAACGTTCATCATTTAAAGGTCTagatcggaaga                                                       >  1:1579638/1‑90 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaaga                                                       >  1:6473665/1‑90 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaaga                                                       >  1:6209204/1‑90 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgagat                                                       >  1:1615361/1‑96 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:69282/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:4030132/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:1382480/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:3539589/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:1442476/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:3356380/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:1464514/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:2198139/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:268817/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:1822859/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                                       >  1:2415610/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGATCTAGCGTTGAGtt                                                       >  1:4837097/1‑100 (MQ=11)
                tGGCTACTATCTAAGATATGCATTGAGGTATCGCGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaaga                                                       >  1:5400519/1‑90 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgagatc                                                      >  1:692659/1‑95 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgagatc                                                      >  1:2077121/1‑95 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgagatc                                                      >  1:4281941/1‑95 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                                      >  1:5918183/1‑100 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                                      >  1:6079586/1‑100 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                                      >  1:1100658/1‑100 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                                      >  1:2845010/1‑100 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                                      >  1:3670492/1‑100 (MQ=11)
                 ggCTACTATCTAAGATATGCATTGAGATATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                                      >  1:4734758/1‑100 (MQ=11)
                     actaTCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGa                                                  >  1:27442/1‑100 (MQ=11)
                     actaTCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGa                                                  >  1:6493009/1‑100 (MQ=11)
                        aTCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAata                                               >  1:2769448/1‑100 (MQ=11)
                           aaaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGGGTTCAAGAATATGc                                            >  1:4968976/2‑100 (MQ=255)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAGTATGcc                                           >  1:2489148/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                                           >  1:3057598/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                                           >  1:2887203/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                                           >  1:5450606/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                                           >  1:4339015/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                                           >  1:6462360/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                                           >  1:2288241/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                                           >  1:5557220/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                                           >  1:2490778/1‑100 (MQ=11)
                            aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAATTCAAGAATACGcc                                           >  1:4946783/1‑100 (MQ=11)
                             tgATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccc                                          >  1:4159543/2‑100 (MQ=11)
                               taatGCATTGAGTTATCGTGATATGTCTGAAAAATTAAGGGAACGTGGTGTAAACGTTCATCATGTAACGGTCAAGCGTTGAGTTCAAGAATATGccccg                                        >  1:855767/3‑99 (MQ=11)
                               atatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccccg                                        >  1:5074940/1‑99 (MQ=11)
                               atatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccccg                                        >  1:5784564/1‑99 (MQ=11)
                               atacGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATGTGccccg                                        >  1:3080560/1‑99 (MQ=11)
                                tatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCGAGAATATGccccga                                       >  1:4821803/1‑98 (MQ=11)
                                tatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccccga                                       >  1:3809121/1‑98 (MQ=11)
                                tatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccccga                                       >  1:5819722/1‑98 (MQ=11)
                                 ctGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCaga                                      >  1:4097378/2‑98 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAATGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                                      >  1:1644118/1‑100 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCGTTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                                      >  1:4449289/1‑100 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcccctag                                      >  1:3440041/1‑97 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcccccag                                      >  1:1565396/1‑97 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCaga                                      >  1:4197924/1‑98 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                                      >  1:4291365/1‑100 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                                      >  1:6148740/1‑100 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                                      >  1:3096310/1‑100 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATACACCCCaga                                      >  1:1810249/1‑98 (MQ=11)
                                 atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATAAACCCCaga                                      >  1:910549/1‑98 (MQ=11)
                                   gCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAttt                                    >  1:82188/1‑100 (MQ=11)
                                        gAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTatat                               >  1:6098239/1‑100 (MQ=11)
                                              acGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAAtt                         >  1:1152524/2‑100 (MQ=11)
                                               cGTGATATGTCTGAAATATTAAGGGAACGTGGTGTGAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAAtgg                        >  1:1604551/1‑98 (MQ=11)
                                               cGTGATATGCCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAAtca                        >  1:3918234/1‑98 (MQ=11)
                                                  gATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGga                     >  1:5457801/1‑100 (MQ=11)
                                                  gATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAACTTGga                     <  1:4634781/100‑1 (MQ=11)
                                                   ctatgtCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGgaa                    >  1:3219394/2‑100 (MQ=11)
                                                     gctccTGTAATATTAAGGGAACGTGGGGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGgaaga                  >  1:4680563/5‑100 (MQ=11)
                                                     atgtCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGgaaga                  >  1:368640/4‑100 (MQ=11)
                                                       accTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGGAAGaaa                >  1:5347265/3‑100 (MQ=11)
                                                        gcTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGGAAGaaaa               >  1:5786308/2‑100 (MQ=11)
                                                           gAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGGGTTCAAGAATATGCCCCGATTTTATATCAAATTTGGAAGAAAAAGc            >  1:1913774/1‑100 (MQ=255)
                                                           gAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGGAAGAAAAAGc            >  1:5386227/1‑100 (MQ=11)
                                                           gAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGGAAGAAAAAGc            >  1:550132/1‑100 (MQ=11)
                                                           gAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGGAAGAAAAAGc            >  1:6181985/1‑100 (MQ=11)
                                                           gAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGGAAGAAAAAGc            >  1:2758098/1‑100 (MQ=11)
                                                           gAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTCGgaagatcggaa            >  1:2058973/1‑94 (MQ=11)
                                                           gAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTCGgaagatcggaa            >  1:5549552/1‑94 (MQ=11)
                                                                     gggAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagc  >  1:1724395/1‑97 (MQ=1)
                                                                                                |                                                                        
TTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCT  >  NC_007793/76306‑76474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑