Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 76,361 A→G I31M (ATA→ATG)  SAUSA300_RS00345 → transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00779376,3610AG100.0% 254.3 / NA 142I31M (ATA→ATG) SAUSA300_RS00345transposase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (137/5);  total (137/5)

Only 100 of 144 total aligned reads displayed.

TCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAA  >  NC_007793/76279‑76456
                                                                                  |                                                                                               
acAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGa                                                                                >  1:370121/2‑100 (MQ=11)
 cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGaa                                                                               >  1:4239762/1‑100 (MQ=14)
 cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGaa                                                                               >  1:1976417/1‑100 (MQ=14)
 cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGaa                                                                               >  1:1937779/1‑100 (MQ=14)
     cctaAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACgtg                                                                           >  1:2049222/3‑100 (MQ=17)
      ataAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAAcagat                                                                          >  1:1143753/1‑96 (MQ=12)
       taAACAATTTAACAAGGATGTTATCTCTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACgtggt                                                                         <  1:1515483/100‑1 (MQ=12)
       taAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACgtggt                                                                         >  1:6058244/1‑100 (MQ=17)
        aaaCAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACgtggtg                                                                        >  1:1285108/1‑100 (MQ=17)
        aaaCAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACgtggtg                                                                        >  1:424537/1‑100 (MQ=17)
         aaCAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGgtgt                                                                       <  1:6204507/100‑1 (MQ=17)
                tAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGtt                                                                >  1:5039116/1‑100 (MQ=17)
                 aaCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTtc                                                               >  1:456138/1‑100 (MQ=17)
                  aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTtca                                                              >  1:2026650/1‑100 (MQ=17)
                   cAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTtcat                                                             >  1:3163494/1‑100 (MQ=17)
                             aTCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACgg                                                   >  1:3223717/1‑100 (MQ=12)
                              gcACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGt                                                  >  1:3772254/2‑100 (MQ=12)
                               cACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTc                                                 >  1:4797664/1‑100 (MQ=12)
                                  tGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTat                                              <  1:4778488/100‑2 (MQ=12)
                                       ccGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTg                                         >  1:470165/1‑100 (MQ=255)
                                       ccGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTg                                         <  1:5337079/100‑1 (MQ=255)
                                        gcatGGCTACTATCTAAGATCTGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTga                                        >  1:3868220/4‑99 (MQ=11)
                                        ctgtGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTga                                        >  1:5986129/4‑99 (MQ=11)
                                        ccatGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGCCTagatcgga                                        >  1:261941/4‑93 (MQ=11)
                                         cttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgag                                       >  1:930581/2‑98 (MQ=11)
                                         cttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgag                                       >  1:5143440/2‑98 (MQ=11)
                                         cctGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAACGTTgag                                       >  1:856048/3‑98 (MQ=11)
                                         attGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaa                                       >  1:1069786/2‑92 (MQ=11)
                                         attGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaa                                       >  1:2752975/2‑92 (MQ=11)
                                          ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGt                                      >  1:4535902/1‑100 (MQ=11)
                                          ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGt                                      >  1:4027755/1‑100 (MQ=11)
                                          ctGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgaga                                      >  1:5076083/2‑97 (MQ=11)
                                          ctGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGt                                      >  1:6611273/2‑100 (MQ=11)
                                          ctGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGCGGTGTAAACGTTCATCATTTAACGGTCTagatcggaag                                      >  1:5493938/2‑91 (MQ=11)
                                           tGGCTGCTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                     >  1:6459776/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAATGGAACGTGGTGTAAACGTTCATCATTTAAAGGTCTagatcggaaga                                     >  1:1579638/1‑90 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGtatagatcggaaga                                     >  1:1612276/1‑90 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaaga                                     >  1:6209204/1‑90 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaaga                                     >  1:6473665/1‑90 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTgagat                                     >  1:1615361/1‑96 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                     >  1:3539589/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                     >  1:1442476/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                     >  1:69282/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                     >  1:1382480/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                     >  1:268817/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                     >  1:2198139/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGtt                                     >  1:4030132/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGATCTAGCGTTGAGtt                                     >  1:4837097/1‑100 (MQ=11)
                                           tGGCTACTATCTAAGATATGCATTGAGGTATCGCGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTagatcggaaga                                     >  1:5400519/1‑90 (MQ=11)
                                            ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                    >  1:5918183/1‑100 (MQ=11)
                                            ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                    >  1:2845010/1‑100 (MQ=11)
                                            ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                    >  1:1100658/1‑100 (MQ=11)
                                            ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                    >  1:6079586/1‑100 (MQ=11)
                                            ggCTACTATCTAAGATATGCATTGAGATATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTc                                    >  1:4734758/1‑100 (MQ=11)
                                                actaTCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGa                                >  1:27442/1‑100 (MQ=11)
                                                actaTCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGa                                >  1:2103384/1‑100 (MQ=11)
                                                actaTCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGa                                >  1:6493009/1‑100 (MQ=11)
                                                   aTCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAata                             >  1:1860182/1‑100 (MQ=11)
                                                   aTCTAAGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAata                             >  1:2769448/1‑100 (MQ=11)
                                                      aaaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGGGTTCAAGAATATGc                          >  1:4968976/2‑100 (MQ=255)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAGTATGcc                         >  1:2489148/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                         >  1:1197796/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                         >  1:5557220/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                         >  1:5450606/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                         >  1:6353524/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                         >  1:2887203/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                         >  1:2490778/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                         >  1:2288241/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcc                         >  1:4339015/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGGTCAAGAATATGcc                         >  1:6473925/1‑100 (MQ=11)
                                                       aaGATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAATTCAAGAATACGcc                         >  1:4946783/1‑100 (MQ=11)
                                                        tgATATGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccc                        >  1:4159543/2‑100 (MQ=11)
                                                          taatGCATTGAGTTATCGTGATATGTCTGAAAAATTAAGGGAACGTGGTGTAAACGTTCATCATGTAACGGTCAAGCGTTGAGTTCAAGAATATGccccg                      >  1:855767/3‑99 (MQ=11)
                                                          atatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccccg                      >  1:5784564/1‑99 (MQ=11)
                                                          atatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCa                      >  1:3557158/1‑100 (MQ=11)
                                                          atacGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATGTGccccg                      >  1:3080560/1‑99 (MQ=11)
                                                           tatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCGAGAATATGccccga                     >  1:4821803/1‑98 (MQ=11)
                                                           tatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccccga                     >  1:5819722/1‑98 (MQ=11)
                                                           gatGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccccga                     >  1:80668/2‑98 (MQ=11)
                                                           catGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGccccga                     >  1:3412529/2‑98 (MQ=11)
                                                            ctGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCaga                    >  1:4097378/2‑98 (MQ=11)
                                                            ctGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCaga                    >  1:4251511/2‑98 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCGTTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                    >  1:4449289/1‑100 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcccctag                    >  1:3440041/1‑97 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGcccccag                    >  1:1565396/1‑97 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                    >  1:3096310/1‑100 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                    >  1:5412590/1‑100 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAt                    >  1:4291365/1‑100 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATACCCCaga                    >  1:1695972/1‑98 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATACACCCCaga                    >  1:1810249/1‑98 (MQ=11)
                                                            atGCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATAAACCCCaga                    >  1:910549/1‑98 (MQ=11)
                                                              gCATTGAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGAttt                  >  1:4633952/1‑100 (MQ=11)
                                                                   gAGTTATCGTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTatat             >  1:6098239/1‑100 (MQ=11)
                                                                          cGTGATATGCCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAAtca      >  1:3918234/1‑98 (MQ=11)
                                                                           gTGATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTg     >  1:2377511/1‑100 (MQ=11)
                                                                             gATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCaaagatcgg   >  1:6565436/1‑94 (MQ=11)
                                                                             gATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGga   >  1:3786212/1‑100 (MQ=11)
                                                                             gATATGTCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAACTTGga   <  1:4634781/100‑1 (MQ=11)
                                                                              ctatgtCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAATTTGgaa  >  1:3219394/2‑100 (MQ=11)
                                                                              atatgtCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTTAACGGTCTAGCGTTGAGTTCAAGAATATGCCCCGATTTTATATCAAAATTggga  <  1:5580656/100‑3 (MQ=11)
                                                                                  |                                                                                               
TCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAA  >  NC_007793/76279‑76456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑