| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 621,854 | T→G | S987A (TCA→GCA) | SAUSA300_RS02925 → | MSCRAMM family adhesin SdrE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 621,854 | 0 | T | G | 98.5% | 740.6 / 9.0 | 817 | S987A (TCA→GCA) | SAUSA300_RS02925 | MSCRAMM family adhesin SdrE |
| Reads supporting (aligned to +/- strand): ref base T (12/0); new base G (794/10); total (807/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.45e-01 | |||||||||||
Only 100 of 819 total aligned reads displayed.
CAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCAGACTCAGATAG > NC_007793/621759‑621951 | cagactcagacagcgactcagactcagacagTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGActcagactcaga > 1:3361543/1‑100 (MQ=25)cagacgcagatagcgattcagatgcggacagTGATTCAGACGCAGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGa > 1:4029003/1‑100 (MQ=2) ttatcccagcgattcagacgcagatagCGATTCTGATGCGCACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGc > 1:1004773/7‑100 (MQ=2) acagggcgactcagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGat > 1:2740358/6‑99 (MQ=2) cagatgcggacagcgattcagacgcagacagcgattcagacgcaGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGACtcagattcaga > 1:3098806/9‑100 (MQ=2) cagactcagacagTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcaga > 1:1537446/1‑100 (MQ=255) cagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga > 1:3810205/1‑100 (MQ=2) tgacgcagatagCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcggac > 1:3501881/2‑94 (MQ=0) cgacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcagcc > 1:1690216/2‑98 (MQ=2) agacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcagac > 1:4291587/1‑99 (MQ=2) gacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcagaca > 1:2495655/1‑98 (MQ=2) aagcgattcagatgcgGACAGCGATTCAGAAGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtct > 1:1411611/5‑99 (MQ=11) ggattctgatgcgGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGAACAGCGATtcagac > 1:4941299/2‑100 (MQ=2) ctcagattccgaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGCTTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcg > 1:3630828/2‑96 (MQ=2) accacccgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgca > 1:1377372/9‑100 (MQ=2) ctgatgcggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACtcagacgcaga > 1:2937919/9‑100 (MQ=2) ctgatgcggaCAGCGACGCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACtcagacgcaga > 1:566107/9‑100 (MQ=2) ccgacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:1325030/7‑100 (MQ=2) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:1938930/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:5935270/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:2545974/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:2626804/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:1144004/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:881015/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagacgcaga > 1:3725134/1‑100 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGACGCGGACAGCGATTAAGACGCTCATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:2287020/1‑94 (MQ=2) cagattcagaCAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATtcagactcaga > 1:6125688/1‑100 (MQ=255) cagatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagacgcaga > 1:3138081/1‑100 (MQ=2) cagacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:3781037/7‑100 (MQ=0) cagacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:3266920/7‑100 (MQ=0) cagacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:4341591/7‑100 (MQ=0) agacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGTGATTCTGATGCGGACAGCGATtcagacgcagat > 1:930333/6‑99 (MQ=0) agacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGAGTCTGATGCGGACAGCGATtcagacgcagat > 1:2019952/6‑99 (MQ=0) tacgcagaTAGCGACTCTGATGCGGACAGCGACTCAGATTCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACa > 1:1802516/5‑100 (MQ=11) gatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGCTGCGGACAGCGATtcagacgcagata > 1:5102881/7‑98 (MQ=2) gatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagacgcagata > 1:1242416/7‑98 (MQ=2) gatgcggaCAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcagata > 1:3060999/7‑98 (MQ=2) gatgcggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACtcagacgcagata > 1:5308300/7‑98 (MQ=2) gatgcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcagata > 1:6530459/1‑98 (MQ=2) ctcagaCAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGAAGCGGACAGc > 1:5146529/2‑100 (MQ=11) tcagaCAGCGATTCAGACACAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg > 1:1899575/1‑100 (MQ=11) gcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg > 1:6459498/4‑100 (MQ=2) gcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg > 1:1270589/4‑100 (MQ=2) ccggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGCTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg > 1:6192255/4‑100 (MQ=2) cggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:2079537/3‑100 (MQ=2) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGCCAGCGa > 1:1636687/1‑100 (MQ=2) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCgt > 1:6301957/1‑99 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:27948/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:5395213/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:1194979/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:1460514/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:1995082/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:3547800/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:601204/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:6072099/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:6380405/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:6227559/1‑100 (MQ=11) agaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCAGATTCTGATAACGACTCTGATGCGGACAGCGAc > 1:5031291/1‑100 (MQ=2) tgcAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGTCAGCGatt > 1:2876723/3‑98 (MQ=2) cAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTTAGATAGCGATTCTGATGCGGACAGCGATtca > 1:4530179/1‑100 (MQ=2) cAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGATTCAGACGCAGATAGCGATtca > 1:5811473/1‑100 (MQ=2) aGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGCTtcag > 1:4462548/1‑100 (MQ=2) ccgacgcagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:2193026/7‑100 (MQ=2) cagattcagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCACACAGCGATtcagactcaga > 1:3888702/1‑100 (MQ=2) cagacgcagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:723468/7‑100 (MQ=2) aacgcagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATa > 1:3396895/5‑100 (MQ=2) gcagatAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCg > 1:5857551/2‑100 (MQ=11) ccagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCg > 1:6588156/2‑100 (MQ=11) cagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCGGATTCAGATAGCGa > 1:4848088/1‑100 (MQ=2) cagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGa > 1:685401/1‑100 (MQ=11) tgatAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGAt > 1:804915/2‑100 (MQ=11) tgacaGCGCCTCAGTTTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGAt > 1:5247547/5‑100 (MQ=1) agatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGACTCAGACGCAGATAGCGAt > 1:4385546/1‑100 (MQ=11) agatAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTATGATACGGACAGCGACTCAGATTCAGACAGCGAt > 1:2687747/1‑100 (MQ=2) gacaGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGAtt > 1:4648553/4‑100 (MQ=1) gCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGa > 1:2455196/1‑100 (MQ=2) attctgATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTc < 1:3176596/95‑1 (MQ=2) aCTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCTGACGCAGATAGCGATTCAGAcgc > 1:489406/1‑98 (MQ=11) ttgATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGatgcgga > 1:551923/3‑94 (MQ=0) ctgATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGAcgctga > 1:3847925/3‑95 (MQ=2) cAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGa > 1:5594363/1‑100 (MQ=11) tgATGCGGACAGCGATTCAGACGCAGATAGCGATTCTAATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGACTCTGatgcggac > 1:4224296/2‑93 (MQ=0) tgATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGatgcggac > 1:4700714/2‑93 (MQ=2) gccaccagACAGCGATTCAGACGCAGATAGCGATTCAGCTTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGat > 1:4200339/8‑99 (MQ=11) gATGCGGACAGCGATTCAGACGCCGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGCCAGCGATTCAGACGCAGATAGCGATTCTGatgcggaca > 1:5194788/1‑92 (MQ=2) gATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGACTCTGatgcggaca > 1:6403191/1‑92 (MQ=0) gATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGACTCTGatgcggaca > 1:5721654/1‑92 (MQ=0) gATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGatgcggaca > 1:4129588/1‑92 (MQ=2) gATGCGGACAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGCTTCAGACGCAGTTAGCGATTCAGATTCAGATAGCGATTCTGatgcggaca > 1:5441170/1‑92 (MQ=0) ctgcGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAg > 1:3005421/4‑100 (MQ=2) atgcGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAg > 1:1075677/4‑100 (MQ=2) gtcagACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGCTAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGc > 1:4804179/5‑100 (MQ=1) gggACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGATAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGAATCTGATGCGGACAGCGa > 1:3444765/2‑100 (MQ=2) cagACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGa > 1:2391650/3‑100 (MQ=11) cagACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGa > 1:2130163/3‑100 (MQ=11) cagACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGa > 1:3955793/3‑100 (MQ=11) cagACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGa > 1:1104702/3‑100 (MQ=11) cagACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGa > 1:5484034/3‑100 (MQ=11) agACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCTGACGCAGATAGCGATTCAGACGCAGATAGCGac > 1:4093735/2‑99 (MQ=11) agACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGac > 1:176495/2‑99 (MQ=11) | CAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCAGACTCAGATAG > NC_007793/621759‑621951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |