| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 618,040 | A→T | S1228S (TCA→TCT) | SAUSA300_RS02920 → | serine‑aspartate repeat‑containing protein D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 618,040 | 0 | A | T | 82.6% | 85.4 / 40.8 | 132 | S1228S (TCA→TCT) | SAUSA300_RS02920 | serine‑aspartate repeat‑containing protein D |
| Reads supporting (aligned to +/- strand): ref base A (22/1); new base T (104/5); total (126/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.55e-02 | |||||||||||
Only 100 of 132 total aligned reads displayed.
TCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGA‑TTCAGATAGCGACT‑CAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGA > NC_007793/617954‑618138 | ccAGATAGCGATTCAGATTCAGACAGCGCCTCAGACGCAGATAGCGATTCAGGTGCGGACAGCGATTCAGA‑CGCAGATAGCGATT‑CTGATGTGGACAgat > 1:3579915/2‑98 (MQ=0) cAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGA‑TTCAGATAGCGACTGCAGAtcggaagagca > 1:1542661/1‑90 (MQ=14) aGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAAACGCCGATAGCGACTCTGC‑TGCGGATAACGACT‑CAGATGCAGACAGCGAttacg > 1:3130173/1‑97 (MQ=2) tcggacagcgactcagattcagacagcgactcagacgcaGATAGCGACTCAGA‑TGCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCg > 1:3829705/4‑100 (MQ=11) gcggacagcgactcagacgcagatagcgactcagacgcaGATAGCGACTCTGA‑TGCGGACAGCGACT‑CAGATTCAGACAGCGATTCAGACGCAGATAGCg > 1:5955169/4‑100 (MQ=11) ctctagcgactctgatgcggacagcgactcagacgcagaTAGCGACTCAGA‑CGCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGat > 1:5097565/5‑99 (MQ=2) gactcagacgcagatagcgactcagacgcagatagcGACTCTGA‑TGCGGACAGCGACT‑CAGATTCCGACAGCGATTCAGACGCAGATAGCGACtctgatt > 1:6015302/1‑100 (MQ=14) ctcagattcagacagcgactcagacgcagaTAGCGACTCAGA‑CGCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGATtctgatgcg > 1:3731227/1‑97 (MQ=11) cctgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGattcagattcag > 1:124014/10‑100 (MQ=11) ttgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcaga > 1:6222744/9‑100 (MQ=11) gcgaggcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcaga > 1:3230065/9‑100 (MQ=11) ctgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGACtcagacgcaga > 1:4408402/9‑100 (MQ=2) ctgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGACtcagacgcaga > 1:5304036/9‑100 (MQ=2) ctgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGACtcagacgcaga > 1:3143221/9‑100 (MQ=2) ctgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGACtcagacgcaga > 1:3848184/9‑100 (MQ=2) cctgggcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGACtcagacgcaga > 1:382393/9‑100 (MQ=2) cagactcagacagcgactcagactcagaTAGTGACTCAGA‑TTCAGATAGCGACT‑CAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcaga > 1:2792668/1‑100 (MQ=255) cagactcagacagcgactcagactcagaTAGTGACTCAGA‑TTCAGATAGCGACT‑CAGATTCGGACAGCGATTCAGACTCAGATAGCGACtcagattcaga > 1:127730/1‑100 (MQ=255) agcttgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgattcgga > 1:3149353/9‑100 (MQ=2) acgaagcagatagcgactctgatgcggaCAGTGACTCAGA‑CGCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAAtctgaagcaga > 1:6652682/7‑100 (MQ=2) tgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCCGACGCAGATAGCGAttcagattcagac > 1:758795/8‑99 (MQ=2) tgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATtccgattcagac > 1:5102163/8‑99 (MQ=11) tgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACagcgactcagacgcagatagcgactcagacgcagat > 1:4610633/8‑100 (MQ=11) tgatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGCCtcagacgcagat > 1:5727756/8‑100 (MQ=2) ctgtgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACACCGATTCAGACGCAGATAGCGATtcagattcagat > 1:410638/8‑100 (MQ=11) ccctgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACagcgactcagacgcagatagcgactcagacgcagat > 1:5421114/8‑100 (MQ=11) agatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACagcgactcagacgcagatagcgactcagacgcagat > 1:3520794/8‑100 (MQ=11) gctgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:414679/7‑98 (MQ=11) gattcagacagcgactcagacgcagaTAGCGACTCAGA‑CGCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGATtctgatgcggaca < 1:2223079/97‑8 (MQ=0) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATGGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:6224015/7‑98 (MQ=2) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCCGATAGCGAttcagattcagaca > 1:2239772/7‑98 (MQ=2) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGCttcagattcagaca > 1:4885022/7‑98 (MQ=2) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:1176726/7‑98 (MQ=11) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:4442970/7‑98 (MQ=11) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:3683718/7‑98 (MQ=11) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:5030851/7‑98 (MQ=11) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:6466110/7‑98 (MQ=11) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:6339632/7‑98 (MQ=11) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:2368281/7‑98 (MQ=11) gatgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:2175714/7‑98 (MQ=11) gatgcagacagcgactcagacgcagaTAGCGATTCAGA‑TGCGGACAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGAAAGCGATtctgatgcagaca > 1:3086470/5‑98 (MQ=2) gtgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGcgactcagacgcagatagcgactcagacgcagatag > 1:1795222/6‑100 (MQ=11) ctgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGcgactcagacgcagatagcgactcagacgcagatag > 1:4910679/6‑100 (MQ=11) ctgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGcgactcagacgcagatagcgactcagacgcagatag > 1:2142470/6‑100 (MQ=11) atgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAg > 1:506086/6‑100 (MQ=11) atgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAg > 1:2369391/6‑100 (MQ=11) atgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGcgactcagacgcagatagcgactcagacgcagatag > 1:3028127/6‑100 (MQ=11) tgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGc > 1:4969799/5‑100 (MQ=11) tgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCgactcagacgcagatagcgactcagacgcagatagc > 1:2185964/5‑100 (MQ=11) tgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCgactcagacgcagatagcgactcagacgcagatagc > 1:2980657/5‑100 (MQ=11) cgcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCGGATAGCGATTCAGATTCAGACAGc > 1:4183365/5‑100 (MQ=11) cacggatagcgactctgatgcggaCAGCGACTCAGA‑CGCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGc > 1:336843/8‑100 (MQ=2) gcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCg > 1:5619826/4‑100 (MQ=11) gcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCg > 1:6530453/4‑100 (MQ=11) gcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGACTCAGATTCAGACAGCg > 1:6234034/4‑100 (MQ=11) gcggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCAATTCAGACGCAGATAGCGATTCAGATTCAGACAGCg > 1:4113938/4‑100 (MQ=11) acggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGactcagacgcagatagcgactcagacgcagatagcg > 1:4243821/4‑100 (MQ=11) gggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGAGGACAGCGATTCAGACGAAGATAGCGATTCAGATTCAGACAGCGa > 1:5580588/3‑100 (MQ=2) cggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGa > 1:904622/3‑100 (MQ=11) cggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGActcagacgcagatagcgactcagacgcagatagcga > 1:3716803/3‑100 (MQ=11) cagatagcgactcagattcagaTAGTGATTCAGACTTCAGATAGCGACT‑CAGATTCGGACAGCGATTCAGGCTCAGATAGTGACTCAGATTCAGATAGCg > 1:3159701/1‑100 (MQ=11) aggccagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGActcagacgcagatagcgactcagacgcagatagcga > 1:1814697/5‑100 (MQ=11) taacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAAACGCAGATAGCGac > 1:4817571/3‑99 (MQ=11) ggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGac > 1:178558/2‑99 (MQ=11) ggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGac > 1:632321/2‑99 (MQ=11) ggacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGac > 1:6036896/2‑99 (MQ=11) ccacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCCGACAGCGATTCAGACGCAGATAGCGATTCCGATTCGGTTAACGac > 1:4060829/3‑99 (MQ=2) agatagcgactcagacgcagaTAGCGACTCTGA‑TGCGGACAGCGACT‑CAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGAt > 1:3313709/1‑100 (MQ=11) agacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGAt > 1:4109666/1‑100 (MQ=2) agacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGac > 1:2039525/1‑99 (MQ=11) agacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCCGATAGCgcc > 1:5823165/1‑98 (MQ=11) agacagcgactcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGActcagacgcagatagcgactcagacgcagatagcgac > 1:4481661/1‑99 (MQ=11) gacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATacagacagatcgg > 1:2665582/1‑95 (MQ=2) gacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGcactc < 1:6291527/100‑5 (MQ=11) gacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGact > 1:5017869/1‑98 (MQ=11) gacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGacc < 1:4769031/100‑3 (MQ=11) gacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGActcagacgcagatagcgactcagacgcagatagcgact > 1:3628143/1‑98 (MQ=11) cccagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGAtt > 1:4364540/3‑100 (MQ=11) cacagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGACT‑CTGATGCGGACAGCGActcagacgcagatagcgactcagacgcagatagcgacg > 1:6453800/2‑98 (MQ=11) aacggcgactcagacgcagaTAGCGACTCTGA‑TGCGGACAGCGACT‑CAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGAtt > 1:2301942/5‑100 (MQ=11) ctagcgactctgatgcggaCAGCGACTCAGA‑CGCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACTc > 1:2219100/3‑100 (MQ=2) ccagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTc > 1:1402954/2‑100 (MQ=11) acagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATacagacagatcgga > 1:75982/1‑94 (MQ=2) cagcgattcagacgcagaTAGCGATTCAGA‑TTCAGATAACGACT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGAATca > 1:3452218/1‑99 (MQ=2) agcgactcagacgcagaTAGCGACTCTGA‑TGCGGACAGCGACT‑CAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGGTAGCGATTcag > 1:5854696/1‑98 (MQ=11) agcgactcagacgcagaTAGCGACTCTGA‑TGCGGACAGCGACT‑CAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTcag > 1:4887167/1‑98 (MQ=11) agcgactcagacgcagaTAGCGACTCTGA‑TGCGGACAGCGACT‑CAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTcag > 1:1395631/1‑98 (MQ=11) attcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCGGAcgc < 1:2704333/98‑3 (MQ=2) ggcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGACTCGGAcaca > 1:3761248/3‑100 (MQ=11) tcagacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTcaggcgcag > 1:2569269/1‑92 (MQ=2) tgacgcagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCGGACGCAGAt > 1:71438/2‑100 (MQ=2) ccagaCAGCGATTCAGA‑CGCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTTAGCTTCAGATAGCGATTCTGATGCGGATAGCg > 1:2944327/2‑100 (MQ=2) cagaTAGTGACTCAGA‑TTCAGATAGCGACT‑CAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGa > 1:3742993/1‑100 (MQ=255) cagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCTGACGCAGATAGCGa > 1:1108026/1‑100 (MQ=2) cagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCGGACGCAGAtcggaa > 1:4824215/1‑95 (MQ=2) cagaTAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGATTCGAACGCAGAtcggaa > 1:3747470/1‑95 (MQ=2) ctAGCGATTCAGA‑TTCAGATAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGCTTCAGACAGCGACTCGGACGCAGATAGCGATtc > 1:1923951/2‑100 (MQ=11) tGACTCAGA‑CGCAGATAGCGATT‑CAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtcagat > 1:4609483/1‑100 (MQ=2) agacgcagatAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGAGAGCGATTCTGATGCAGATAGCGATtcagacgcagat > 1:6468681/6‑100 (MQ=2) acccagatAGCGATT‑CTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGACTCCGACGCAGATAGCGTTTCAGACGCAGATAg > 1:2027464/4‑100 (MQ=2) | TCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGA‑TTCAGATAGCGACT‑CAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGA > NC_007793/617954‑618138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |