Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 617,954 T→G S1200A (TCA→GCA)  SAUSA300_RS02920 → serine‑aspartate repeat‑containing protein D

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007793617,9540TG86.9% 402.4 / 86.9 321S1200A (TCA→GCA) SAUSA300_RS02920serine‑aspartate repeat‑containing protein D
Reads supporting (aligned to +/- strand):  ref base T (39/3);  new base G (271/8);  total (310/11)
Fisher's exact test for biased strand distribution p-value = 1.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.90e-02

Only 100 of 360 total aligned reads displayed.

ACAGAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGC  >  NC_007793/617856‑618034
                                                                                                  |                                                                                
   cagacgcagatagcgactcagacgcagatagcgactcTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGAttcagattcaga                                                                              >  1:1251213/2‑100 (MQ=11)
   cagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGCCAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGAttcagattcaga                                                                              >  1:3413160/2‑100 (MQ=11)
      acgcAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAg                                                                           >  1:2626044/4‑100 (MQ=11)
       cgcAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGCTTCAGACGCAGATAGCGATTCCGATTCAGATAGc                                                                          >  1:3265614/3‑100 (MQ=2)
         cAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAG‑‑‑‑‑‑AGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGa                                                                  >  1:5930020/1‑100 (MQ=1)
            acagcgATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTc                                                                     >  1:6045013/6‑100 (MQ=11)
                ttactCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGAt                                                                 >  1:5187928/5‑100 (MQ=11)
                  cttCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGACTCAGacgc                                                               >  1:3129927/2‑97 (MQ=11)
                  acccAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCagatagcgattcagattcagatagcgattcagattc                                                               >  1:5743415/4‑100 (MQ=11)
                   ttgtgACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGAtgcg                                                              >  1:3300524/5‑97 (MQ=11)
                    tCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGAtgcgg                                                             >  1:6541576/1‑96 (MQ=11)
                     cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                            >  1:1032054/1‑100 (MQ=11)
                     cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                            >  1:954901/1‑100 (MQ=11)
                     cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                            >  1:5039958/1‑100 (MQ=11)
                     cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                            >  1:4246522/1‑100 (MQ=11)
                     cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                            >  1:222489/1‑100 (MQ=11)
                     cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                            >  1:1067156/1‑100 (MQ=11)
                      ggACGCAGATAGCGATTCAGATTCAGATAACGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggac                                                           >  1:1505552/2‑100 (MQ=11)
                         cgcagatagcgattcagattcagatagcgattcagattCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagc                                                        >  1:5074028/3‑100 (MQ=11)
                           cggacagcgattcagacgcagatagcgattcagattcagacAGCGAATCAGACGCAGATCGCGATTCAGACGCAGATAGCGACTCTGATgcggccagcga                                                      >  1:5836269/6‑100 (MQ=2)
                           cagatagcgattcagattcagatagcgattcagattCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcga                                                      >  1:560808/1‑100 (MQ=11)
                             gatagcgattcagattcagatagcgattcagattcaGACAGCGAATCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgact                                                    >  1:6202102/1‑100 (MQ=11)
                              ctagcgattcagattcagatagcgattcagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactc                                                   >  1:2094065/2‑100 (MQ=11)
                                agcgattcagattcagatagcgattcagattcagacAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcag                                                 >  1:4783615/1‑100 (MQ=11)
                                 gcgattcagattcagatagcgattcagattcagacaGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcaga                                                >  1:5567027/1‑100 (MQ=11)
                                   caggcagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacg                                              >  1:4203095/5‑99 (MQ=11)
                                    attcagattcagatagcgattcagattcagacagcgacTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgc                                             >  1:4050097/3‑98 (MQ=11)
                                      tcagatgcggacagcgactcagattcagacagcgacTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcag                                           >  1:2865281/1‑100 (MQ=11)
                                      ctagatgcggacagcgactcagattcagacagcgactcAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcag                                           >  1:454410/3‑100 (MQ=11)
                                       tgggcccagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgcctcagattcaga                                          >  1:4097766/7‑100 (MQ=11)
                                       gtccctcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagacagcgactcagacgcaga                                          >  1:4995412/9‑100 (MQ=1)
                                       ctgacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggccagcgactcagattcaga                                          >  1:6369753/7‑100 (MQ=11)
                                       cagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcggctcagacgcaga                                          >  1:13794/1‑100 (MQ=11)
                                       cagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcggacgcaga                                          >  1:3886762/1‑100 (MQ=11)
                                       cagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcggacgcaga                                          >  1:767225/1‑100 (MQ=11)
                                       cagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagatcggaa                                          >  1:2660674/1‑94 (MQ=11)
                                       cagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgtata                                          >  1:1820499/1‑95 (MQ=11)
                                       cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                          >  1:5428935/1‑100 (MQ=11)
                                       cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                          >  1:6334954/1‑100 (MQ=11)
                                       cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                          >  1:4696073/1‑100 (MQ=11)
                                       cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                          >  1:4913622/1‑100 (MQ=11)
                                       acgatgcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagacagcgactcagacgcaga                                          >  1:2479868/9‑100 (MQ=1)
                                        tgatgcggacagcgactcagattcagacagcgactcagaCGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagat                                         >  1:2284320/8‑99 (MQ=11)
                                        tgatgcggacagcgactcagattcagacagcgactcagaCGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagat                                         >  1:727185/8‑99 (MQ=11)
                                        cgacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagac                                         >  1:4654748/6‑100 (MQ=11)
                                        agattcagatagcgattcagattcagacagcgactcAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactccgacgcagaa                                         >  1:789854/1‑99 (MQ=11)
                                        agatgcggacagcgattcagattcagacagcgactcAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagat                                         >  1:6014836/1‑99 (MQ=11)
                                        agacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagac                                         >  1:4158116/6‑100 (MQ=11)
                                        agacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagac                                         >  1:3700046/6‑100 (MQ=11)
                                        agacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagac                                         >  1:5359604/6‑100 (MQ=11)
                                        agacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagactcagac                                         >  1:1857939/6‑100 (MQ=11)
                                         gatgcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagacagcgactcagacgcagata                                        >  1:3980953/7‑98 (MQ=1)
                                         gatgcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagacagcgactcagacgcagata                                        >  1:236397/7‑98 (MQ=1)
                                         gatgcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagacagcgactcagacgcagata                                        >  1:4443971/7‑98 (MQ=1)
                                         gatgcggacagcgactcagattcagacagcgatccagaCGCAGATAGCGATTCAGAGTCAGATAGCGATTCAGATtcagacagcgactcagacgcagata                                        >  1:4627200/7‑98 (MQ=11)
                                          tttcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatag                                       >  1:5242110/2‑100 (MQ=11)
                                          cttcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatag                                       >  1:382451/2‑100 (MQ=11)
                                          attcagatagcgattcagattcagacagcgactccgACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatag                                       >  1:1546070/1‑100 (MQ=11)
                                          acgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagacag                                       >  1:2962282/4‑100 (MQ=11)
                                           cgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGGCGCAGATAGCGACTCTGATgcggacagcgactcagattcagacagc                                      >  1:1925911/3‑100 (MQ=11)
                                           cccagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagatttagacaga                                      >  1:43697/3‑99 (MQ=11)
                                            tcagatagcgattcagattcagacagcgactcagaCGAAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagag                                     >  1:3382895/1‑98 (MQ=11)
                                            gcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGTCGCAGATAGCGACTCTGATgcggacagcgactcagattcagacagca                                     <  1:6093572/99‑2 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGTAGATAGCGACTCTGATgcggacagcgactcagacgcagatcggaa                                    >  1:1781945/1‑94 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGCCTCTGATgcggacagcgactcagacacagatcggaa                                    >  1:2701448/1‑94 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcatacgcagatcggaa                                    >  1:3201536/1‑94 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagaga                                    >  1:5977526/1‑100 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagaga                                    >  1:2023036/1‑100 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagaga                                    >  1:5675098/1‑100 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagaga                                    >  1:3733211/1‑100 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacacagatcggaa                                    >  1:642631/1‑94 (MQ=11)
                                             cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgccgacagcgactcagattcagacagcga                                    >  1:3760086/1‑100 (MQ=11)
                                              agatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagaaagagat                                   >  1:6225673/1‑99 (MQ=11)
                                                atagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagacagcgattc                                 <  1:141459/98‑1 (MQ=11)
                                                 cagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagagatcat                                >  1:5957025/1‑96 (MQ=11)
                                                        tcagatgcggacagcgactcagaCGCAGATAGCGATTCAGATGCGGATAGCGACTCTGATgcggacagcgaatcagacgcagatagcgattctgatgcgg                         >  1:845366/1‑95 (MQ=2)
                                                         ctgatgcggacagcgactcagaCGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGAcagcgactcagattcagacagcgactcagacgcaga                        >  1:6197889/9‑100 (MQ=11)
                                                         cagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGACTCTGATGCGGAcagcgactcagattcagaccgcgattcacacacaga                        >  1:2129936/1‑100 (MQ=11)
                                                            attcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAg                     >  1:4411475/1‑100 (MQ=11)
                                                             ttcagacagcgactcagaCGCAGATAGCGATTCAGATGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCACACGCAGATAgc                    >  1:2549562/1‑99 (MQ=11)
                                                              tcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACACAGATTCAGACAGCGATTCAGACGCAGATAgcg                   >  1:4808026/1‑98 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtcggaa                  >  1:2324268/1‑95 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:3560387/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:1001205/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:2109332/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:6617147/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:2733664/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:2749259/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:3477838/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:5504543/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:364770/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                  >  1:3926393/1‑100 (MQ=11)
                                                               cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGAAGATAGCGa                  >  1:6145504/1‑100 (MQ=11)
                                                                agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGTTGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGat                 >  1:4292999/1‑99 (MQ=11)
                                                                agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGTCAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGat                 >  1:6502618/1‑99 (MQ=11)
                                                                agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGat                 >  1:3853641/1‑99 (MQ=11)
                                                                agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGat                 >  1:1698085/1‑99 (MQ=11)
                                                                agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGat                 >  1:1164912/1‑99 (MQ=11)
                                                                agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGAc                 >  1:2460327/1‑100 (MQ=11)
                                                                agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAAACGCAGATAGCGat                 >  1:4943445/1‑99 (MQ=11)
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ACAGAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGC  >  NC_007793/617856‑618034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑