Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 617,944 T→C S1196S (AGT→AGC)  SAUSA300_RS02920 → serine‑aspartate repeat‑containing protein D

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007793617,9440TC97.4% 501.1 / 2.6 340S1196S (AGT→AGC) SAUSA300_RS02920serine‑aspartate repeat‑containing protein D
Reads supporting (aligned to +/- strand):  ref base T (7/2);  new base C (321/10);  total (328/12)
Fisher's exact test for biased strand distribution p-value = 3.59e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01

Only 100 of 369 total aligned reads displayed.

CAGATTCAGACAGAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCG  >  NC_007793/617847‑618035
                                                                                                 |                                                                                           
      gcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCTGa                                                                                     >  1:1025631/8‑100 (MQ=11)
          ctcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGACTCAGACGCAGATAACGATTCTGatgcg                                                                                 >  1:3856616/4‑96 (MQ=11)
            cagacgcagatagcgactcagacgcagatagcgactcTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGAttcagattcaga                                                                               >  1:3841355/2‑100 (MQ=11)
            cagacgcagatagcgactcagacgcagatagcgactcTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGAttcagattcaga                                                                               >  1:6111229/2‑100 (MQ=11)
               acgcAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAg                                                                            >  1:2626044/4‑100 (MQ=11)
               aCTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAG‑‑‑‑‑‑AGACTCAGATAGTGATTCAGACTCAGATAGCGACTc                                                                      <  1:3996226/100‑1 (MQ=11)
                ggcAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGc                                                                           >  1:1059459/3‑100 (MQ=11)
                     acagcgATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGGCTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTc                                                                      >  1:2320458/6‑100 (MQ=11)
                     acagcgATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTc                                                                      >  1:6045013/6‑100 (MQ=11)
                      cggcgATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTct                                                                     >  1:329608/5‑99 (MQ=11)
                      cagcgATTCAGACGCAGATAGCGATTCAGCTTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTct                                                                     >  1:4367310/5‑99 (MQ=11)
                        ccgactCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCCGATAGCGATTCAGa                                                                   >  1:6597731/6‑100 (MQ=11)
                         ttactCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGAt                                                                  >  1:5187928/5‑100 (MQ=11)
                         tGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGAt                                                                  >  1:2736802/1‑100 (MQ=11)
                         tGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGAt                                                                  >  1:5919489/1‑100 (MQ=11)
                          gactCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGcagatagcgattcagattcagatagcgattcagatt                                                                 >  1:787194/4‑100 (MQ=11)
                           gctCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGAtgc                                                                >  1:341938/3‑98 (MQ=11)
                             tCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGAtgcgg                                                              >  1:6541576/1‑96 (MQ=11)
                              cAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGAtgcgga                                                             >  1:4271579/1‑95 (MQ=11)
                              cAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGAtgcgga                                                             >  1:5472735/1‑95 (MQ=11)
                              cAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGAtgcgga                                                             >  1:5554178/1‑95 (MQ=11)
                              cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                             >  1:5214893/1‑100 (MQ=11)
                              cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                             >  1:5039958/1‑100 (MQ=11)
                              cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                             >  1:5373475/1‑100 (MQ=11)
                              cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                             >  1:3365762/1‑100 (MQ=11)
                              cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                             >  1:954901/1‑100 (MQ=11)
                              cAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtagcgattcagattcagatagcgattcagattcaga                                                             >  1:222489/1‑100 (MQ=11)
                               aGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggac                                                            >  1:2055858/1‑100 (MQ=11)
                               aGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagac                                                            >  1:2128892/1‑100 (MQ=11)
                                  cgcagatagcgattcagattcagatagcgattcagattCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagc                                                         >  1:5074028/3‑100 (MQ=11)
                                      gatagcgattcagattcagatagcgattcagattcaGACAGCGAATCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgact                                                     >  1:6202102/1‑100 (MQ=11)
                                       ctAGCGATTCAGATGCGGACAGCGACTCAGATTCAGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactc                                                    >  1:1475242/2‑100 (MQ=11)
                                        tAGCGATTCAGATGCGGACAGCGACTCAGATTCAGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactca                                                   >  1:4404877/1‑100 (MQ=11)
                                         agcgattcagattcagatagcgattcagattcagacAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcag                                                  >  1:3531489/1‑100 (MQ=11)
                                         agcgattcagattcagatagcgattcagattcagacAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcag                                                  >  1:722732/1‑100 (MQ=11)
                                            caggcagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacg                                               >  1:4203095/5‑99 (MQ=11)
                                             attcagattcagatagcgattcagattcagacagcgacTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgc                                              >  1:4050097/3‑98 (MQ=11)
                                              gacagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcggacgca                                             >  1:4440565/3‑100 (MQ=11)
                                               tcagatgcggacagcgactcagattcagacagcgacTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcag                                            >  1:2865281/1‑100 (MQ=11)
                                               tcagatgcggacaacgactcagattcagacagcgacTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagactcag                                            >  1:1998711/1‑100 (MQ=11)
                                               ctagatgcggacagcgactcagattcagacagcgactcAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcag                                            >  1:454410/3‑100 (MQ=11)
                                               ccagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcag                                            >  1:530748/2‑100 (MQ=11)
                                                tgggcccagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgcctcagattcaga                                           >  1:4097766/7‑100 (MQ=11)
                                                gtccctcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagacagcgactcagacgcaga                                           >  1:4995412/9‑100 (MQ=1)
                                                ctgacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggccagcgactcagattcaga                                           >  1:6369753/7‑100 (MQ=11)
                                                cagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcggacgcaga                                           >  1:3886762/1‑100 (MQ=11)
                                                cagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcggacgcaga                                           >  1:767225/1‑100 (MQ=11)
                                                cagattcagatagcgattcagattcagacagcgactCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagatcggaa                                           >  1:2660674/1‑94 (MQ=11)
                                                cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                           >  1:4696073/1‑100 (MQ=11)
                                                cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                           >  1:5606681/1‑100 (MQ=11)
                                                cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                           >  1:4913622/1‑100 (MQ=11)
                                                cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                           >  1:4173186/1‑100 (MQ=11)
                                                cagatgcggacagcgactcagattcagacagcgactCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcaga                                           >  1:6334954/1‑100 (MQ=11)
                                                cagacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcaga                                           >  1:4593572/7‑100 (MQ=1)
                                                acgatgcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagacagcgactcagacgcaga                                           >  1:2479868/9‑100 (MQ=1)
                                                 tgatgcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATGCAGATAGCGACTCTGATgcagacagcgactcagacgcagat                                          >  1:4775273/8‑99 (MQ=11)
                                                 tgatgcggacagcgactcagattcagacagcgactcagaCGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagat                                          >  1:2284320/8‑99 (MQ=11)
                                                 cgacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagac                                          >  1:2794166/6‑100 (MQ=11)
                                                 agatgcggacagcgactcagattcagacagcgactcAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactccgacgcagat                                          >  1:6073531/1‑99 (MQ=11)
                                                 agacgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagac                                          >  1:5734331/6‑100 (MQ=11)
                                                  gatgcggacagcgactcagattcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATtcagacagcgactcagacgcagata                                         >  1:236397/7‑98 (MQ=1)
                                                   ccgcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagacag                                        >  1:5972726/4‑100 (MQ=11)
                                                   attcagatagcgattcagattcagacagcgactccgACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatag                                        >  1:1546070/1‑100 (MQ=11)
                                                   attcagatagcgattcagattcagacagcgactcagACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacccagatcg                                        >  1:137592/1‑97 (MQ=11)
                                                   atgcagatagcgattcagatgcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagataa                                        <  1:1755614/97‑4 (MQ=11)
                                                     gcagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagag                                      >  1:314545/2‑98 (MQ=11)
                                                      cggacagcgactcagattcaggcagcgacccagaCGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagcga                                     >  1:2964335/3‑100 (MQ=11)
                                                      cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGCCTCTGATgcggacagcgactcagacacagatcggaa                                     >  1:2701448/1‑94 (MQ=11)
                                                      cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagaga                                     >  1:3733211/1‑100 (MQ=11)
                                                      cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagaga                                     >  1:3716697/1‑100 (MQ=11)
                                                      cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagaga                                     >  1:5945955/1‑100 (MQ=11)
                                                      cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagaga                                     >  1:181666/1‑100 (MQ=11)
                                                      cagatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacacagatcggaa                                     >  1:642631/1‑94 (MQ=11)
                                                       agatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagatagagat                                    >  1:5645426/1‑99 (MQ=11)
                                                       agatagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagacgcagaaagagat                                    >  1:6225673/1‑99 (MQ=11)
                                                         atagcgattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcggacagcgactcagattcagacagcgattc                                  <  1:141459/98‑1 (MQ=11)
                                                              gattcagattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATgcgggcagcgactcagattcagacagcgattcagacg                             >  1:5806828/4‑99 (MQ=11)
                                                                 tcagatgcggacagcgactcagaCGCAGATAGCGATTCAGATGCGGATAGCGACTCTGATgcggacagcgaatcagacgcagatagcgattctgatgcgg                          >  1:845366/1‑95 (MQ=2)
                                                                  ctgatgcggacagcgactcagaCGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGAcagcgactcagattcagacagcgactcagacgcaga                         >  1:6197889/9‑100 (MQ=11)
                                                                   ctctgcggacagcgactcagaCGCAGATAGCGACTCAGACGCAGATAGCGACTCAGATGCGGACAGCGACTCTGATTCAGACAGCGATTCAGACGCAGAt                        >  1:185537/8‑100 (MQ=11)
                                                                   agattcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGCTGCGGACAGCGACTCAGATTCTGACAGCGCTTCAGACGCAGAt                        >  1:1220750/1‑100 (MQ=11)
                                                                      ttcagacagcgactcagaCGCAGATAGCGATTCAGATGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCACACGCAGATAgc                     >  1:2549562/1‑99 (MQ=11)
                                                                      ttcagacagcgactcagaCGCAGATAGCGAATCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtcgg                     >  1:3401476/1‑97 (MQ=11)
                                                                       tcagacagcgattcagaCGCAGATAGCGATTCAGATTCAGATAGCGACTCTGATgcggacagcgactcagacgcagacagcgactcaaacggatatagcg                    >  1:1687927/1‑90 (MQ=1)
                                                                       tcagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACACAGATTCAGACAGCGATTCAGACGCAGATAgcg                    >  1:4808026/1‑98 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATCGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                   >  1:6013095/1‑100 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCGGACGCAGATAGCGa                   >  1:4924463/1‑100 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGAtcggaa                   >  1:4654024/1‑95 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                   >  1:2109332/1‑100 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                   >  1:3926393/1‑100 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                   >  1:3766845/1‑100 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                   >  1:364770/1‑100 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                   >  1:3560387/1‑100 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                   >  1:321491/1‑100 (MQ=11)
                                                                        cagacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGa                   >  1:1001205/1‑100 (MQ=11)
                                                                         agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGTTGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGat                  >  1:4292999/1‑99 (MQ=11)
                                                                         agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGTCAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGat                  >  1:6502618/1‑99 (MQ=11)
                                                                         agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGat                  >  1:1164912/1‑99 (MQ=11)
                                                                         agacagcgactcagaCGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGAc                  >  1:2460327/1‑100 (MQ=11)
                                                                                         tcagaTAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGcc  >  1:1911337/1‑99 (MQ=40)
                                                                                                 |                                                                                           
CAGATTCAGACAGAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCG  >  NC_007793/617847‑618035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑