| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 613,495 | T→C | D783D (GAT→GAC) | SAUSA300_RS02915 → | serine‑aspartate repeat‑containing protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 613,495 | 0 | T | C | 89.7% | 38.8 / 1.3 | 68 | D783D (GAT→GAC) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| Reads supporting (aligned to +/- strand): ref base T (6/1); new base C (60/1); total (66/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTC > NC_007793/613398‑613581 | tcgcagaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTATGATGCGGACAg > 1:1339884/4‑100 (MQ=0)ccgcagaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAg > 1:4406746/4‑100 (MQ=2)ccgcagaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAg > 1:4439231/4‑100 (MQ=2)ccgcagaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAg > 1:1104961/4‑100 (MQ=2)acccagaTAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATACCGATTCTGATGCGGACAg > 1:5419052/4‑100 (MQ=0) gcagaTAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCg > 1:1136642/2‑100 (MQ=11) acagaTAGCGATTCAGATGCGGACAGCGACTCAGATTCAGACAGCGACTCAGACGCAGATAGCGAATCAGACGCAGATAGCGACTCTGATGCGGATAGCg > 1:229652/2‑100 (MQ=11) cagaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCga > 1:903414/1‑100 (MQ=11) cagaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCga > 1:493837/1‑100 (MQ=11) cagaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCga > 1:2617177/1‑100 (MQ=11) cagaTAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCga > 1:3310860/1‑100 (MQ=255) cagaTAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCga > 1:4260092/1‑100 (MQ=11) cagaTAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCga > 1:6130787/1‑100 (MQ=11) cagaTAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCGGATTCGGATAGCga > 1:4930532/1‑100 (MQ=255) agaTAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCgat > 1:596927/1‑99 (MQ=11) aaaTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCgac > 1:2460825/3‑100 (MQ=2) aTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCgactc > 1:2850462/1‑100 (MQ=11) aTAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCgactc < 1:5789987/100‑1 (MQ=11) cagatgcggaCAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGActcagacgcaga > 1:4095994/1‑100 (MQ=11) gaCAGCGACTCAGATTCAGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCgatt > 1:1474529/1‑100 (MQ=11) gaCAGCGACTCAGATTCAGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCgatt > 1:2212082/1‑100 (MQ=11) cccAGCGACTCAGATTCAGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCgatt > 1:6619162/3‑100 (MQ=11) tactcagattcagACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCgattctgatg > 1:2471071/2‑99 (MQ=11) tcagatgcggacagcgattcagacgcagacagcgattcagacgcaGATAGCGATTCTGATGCGGACAGCGAGTCAGACGCAGATAGCGattcagattcag > 1:5869738/10‑100 (MQ=2) acagattcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGAGAGCgattctgatgcgg > 1:3350997/2‑96 (MQ=2) cagatgcggacagcgattcagacgcagacagcgattcagacgcaGATAGCGATTCTGATGCGGACAGCGCTTCAGACGCAGATAGCGAttcagattcaga > 1:3872915/9‑100 (MQ=2) cagatgcggacagcgattcagacgcagacagcgattcagacgcaGATAGCGATTCTGATGCGGACAGCGCTTCAGACGCAGATAGCGAttcagattcaga > 1:6053280/9‑100 (MQ=2) ggtgcggacagcgattcagacgcagacagcgattcagacgcaGATAGCGATTCAGATGCGGATAGCGATTCAGACGCAGATAGCGAttcagattcagaca > 1:3049587/7‑98 (MQ=11) ggtgcggacAGCGATTCAGACGCAGATAGCGATTCAGACTCAGACAGCGATTCTGATGCGGACAGCGATTCACACGCAGATAGCGattcagatttagcca > 1:6573055/7‑97 (MQ=2) gattcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGAGTCTGCTGCGGACAGCGACTCAGACGCAGATAGCgattctgatgcggaca > 1:4325731/4‑93 (MQ=2) gattcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCgattctgatgcggaca > 1:5984590/4‑93 (MQ=11) tcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCg > 1:1650908/1‑100 (MQ=11) tcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCg > 1:2815356/1‑100 (MQ=11) tcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCg > 1:4007986/1‑100 (MQ=11) tcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCg > 1:5369032/1‑100 (MQ=11) tcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCg > 1:1199722/1‑100 (MQ=11) tcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCg > 1:1848814/1‑100 (MQ=11) tcagacAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCAGACAGCg > 1:2965739/1‑100 (MQ=11) gcgaacAGCGATTCAGACGCGGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCg > 1:970308/5‑100 (MQ=11) cagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGACGCGGACAGCGACTCAGACGCAGATAGCGATTCAGATTCAGATAGCGa > 1:5568457/1‑100 (MQ=2) cagacAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGa > 1:823330/1‑100 (MQ=255) acagcgattcagacgcagacagcgattcagacgcagATAGCGATTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCAGATTCAGACAGCGACTc > 1:4372147/1‑100 (MQ=11) gactcagacgcagatagcgactcagacgcagatagcgacTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGAcg > 1:1957731/4‑99 (MQ=2) gactcagacgcagatagcgactcagacgcagatagcgacTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGAcg > 1:257146/4‑99 (MQ=2) ctctcagacgcagatagcgactcagacgcagatagcgacTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGAcg > 1:4254332/4‑99 (MQ=2) cAGACGCAGATAGCGATTCAGACTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACTCAGATAGCGATTCTGACGCGGACAGCGATTCTGAcgcgga > 1:2868377/1‑95 (MQ=2) aGACCCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGatgcggac > 1:4238419/1‑93 (MQ=2) tacgcagATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGGTTCAGACGCAGata > 1:4804173/7‑98 (MQ=2) gacgcagATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGCTTCTGATGCGGACAGCGATTCAGACGCAGata > 1:2847570/7‑98 (MQ=2) attcagacaGCGATTCAGACGCAGATAGCGATTCTGATGCGGCCAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGATTCTAACGCGGACAg > 1:6291264/9‑100 (MQ=2) gcagATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAgcg > 1:4458054/4‑98 (MQ=2) gcagATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAgcg > 1:1914692/4‑98 (MQ=2) gcagATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAgcg > 1:410507/4‑98 (MQ=2) gcagATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAgcg > 1:1938854/4‑98 (MQ=2) ccagATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTCATGCGGACAGCGTTTCAGACGCAGATAgcg > 1:3809547/4‑98 (MQ=2) acagATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAgcg > 1:4023369/4‑98 (MQ=2) cagATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTga > 1:5469767/3‑100 (MQ=255) aTAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCGGATTCAGatcggaagag > 1:1805449/1‑91 (MQ=11) accagatgcagacgcagaTAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCgattca > 1:3078718/9‑100 (MQ=0) tctggcagacgcagaTAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCgattcagac > 1:5223022/6‑99 (MQ=2) actcagacgcagATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGCgattcagattc > 1:5905857/1‑100 (MQ=11) tgcagacgcagaTAGCGATTCTGATGCGGACAGCGATTCAGACGCAGGTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCgattcagacgca > 1:4572881/3‑96 (MQ=2) gacagacgcagaTAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACGGCgattcagacgca > 1:4823954/3‑96 (MQ=2) cccagacgcagaTAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCgattcagacgca > 1:5518651/3‑96 (MQ=2) ccagacgcagaTAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCgattcagacgcag > 1:5598211/2‑95 (MQ=2) cagacgcagaTAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCgattcagacgcgga > 1:1724519/1‑94 (MQ=2) cagacgcagaTAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATCCAGACAGCGATTCTGACGCAGACAGTGAttcagacccaga > 1:4509746/1‑100 (MQ=11) cgatgcagaTAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTAAGACAGCAAATCAGACGCAGATAGCGCtgcagaagcagat > 1:4583025/6‑99 (MQ=0) aCTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTc < 1:2252624/100‑1 (MQ=255) | ACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGATTCAGACTCAGATAGCGACTC > NC_007793/613398‑613581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |