Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC	NC_007793	512,783	Δ5,436 bp	between repeat_region	SAUSA300_RS02440–SAUSA300_RS02450	SAUSA300_RS02440, SAUSA300_RS02445, SAUSA300_RS02450

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007793	515157–517909	518266	358–3110	1 [0]	[0] 1	[SAUSA300_RS02445]–SAUSA300_RS02450	[SAUSA300_RS02445], SAUSA300_RS02450

TGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGGAGAGGAA  >  NC_007793/518267‑518366 |                                                                                                    tGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGGagagatc  >  1:6245461/1‑97 (MQ=17) |                                                                                                    TGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGAAAAGAGCGCAACGAGTTTAGTAGAGCTAAATGAGTAAGCGAGAGCCGAAGGAGAGGAA  >  NC_007793/518267‑518366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑