| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,088,072 | (A)6→7 | intergenic (‑336/+353) | SAUSA300_RS10535 ← / ← SAUSA300_RS10540 | peptidoglycan hydrolase/staphylokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,088,066 | 1 | . | A | 93.5% | 81.4 / ‑0.7 | 31 | intergenic (‑330/+359) | SAUSA300_RS10535/SAUSA300_RS10540 | peptidoglycan hydrolase/staphylokinase |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base A (0/29); total (0/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.04e-01 | |||||||||||
AAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGAGGGAGTAGTATGAAAACTATGCTCTCTATCATAAG‑AAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAACAAAAAACTAGCCCG > NC_007793/2087979‑2088155 | aaaaGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACAccc < 1:1866495/100‑1 (MQ=255)aaaaGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACAccc < 1:4426058/100‑1 (MQ=255) aaGCACCCCGTAAACTGTTATGCGGGAATGGTAAAGTCATATATACTACGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAG‑AAAAAAAACCCAGt < 1:3947062/100‑1 (MQ=255) ccGTAAACTATTATACGGGAATGCTAAAGTCATATATACTGCGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAG‑AAAAAAAACCCAGTGACATGc < 1:537606/100‑1 (MQ=255) ccGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATg < 1:5619602/100‑1 (MQ=255) cGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGGGGGAGTAGTATGAAAACCATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGc < 1:1445654/100‑1 (MQ=255) aaaGTCATATATACTACGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTaa < 1:5583925/100‑1 (MQ=255) ttgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:2398057/96‑1 (MQ=255) gcgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:3670023/96‑1 (MQ=255) gcgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:1236328/96‑1 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGTTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:6144547/100‑1 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCaggg < 1:280926/100‑4 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:4306776/100‑1 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:6071262/100‑1 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:4768279/100‑1 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:3083999/100‑1 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTGGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:5807678/100‑1 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACAGGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:3797526/100‑1 (MQ=255) acGGGGGAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACAGGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:6624402/100‑1 (MQ=255) acGGGGGAGTAGTACGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgt < 1:4912068/100‑1 (MQ=255) cgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACGAGGATAGATGTAAATAGTTGATGCAtgta < 1:5653216/97‑2 (MQ=255) cgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgtt < 1:5564426/97‑2 (MQ=255) cgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgtt < 1:2918390/97‑2 (MQ=255) cgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgtt < 1:6414843/97‑2 (MQ=255) cgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgta < 1:3247642/97‑2 (MQ=255) cgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgta < 1:3085882/97‑2 (MQ=255) cgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgta < 1:57996/97‑2 (MQ=255) cgggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCAtgta < 1:857837/97‑2 (MQ=255) gggggAGTAGTATGAAAACTATGCTCTCTATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCATgtgt < 1:1623063/98‑1 (MQ=255) ctcttccgatctATCATAAGAAAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCaaaa < 1:4094286/91‑1 (MQ=255) ctATCGTAAGAAAAAAACGCCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAGCAAAAAACTAGCCCg < 1:2704453/100‑1 (MQ=255) | AAAAGCACCCCGTAAACTATTATACGGGAATGCTAAAGTCATATATACTACGAGGGAGTAGTATGAAAACTATGCTCTCTATCATAAG‑AAAAAACACCCAGTGACATGCTTGGGTGAACAAGGATAGATGTAAATAGTTGATGCATGTGTAACACATCATAACAAAAAACTAGCCCG > NC_007793/2087979‑2088155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |