| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 754,285 | (A)6→7 | intergenic (‑77/‑132) | SAUSA300_RS03645 ← / → SAUSA300_RS03650 | hypothetical protein/MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 754,279 | 1 | . | A | 81.2% | 33.4 / 3.4 | 16 | intergenic (‑71/‑138) | SAUSA300_RS03645/SAUSA300_RS03650 | hypothetical protein/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base A (10/3); total (12/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.79e-01 | |||||||||||
GATTACTTTTTTGCAATTTCATATGATCAATCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAG‑AAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAGCATGAATTGCAATCTGTCGTGGAAA > NC_007793/754187‑754367 | gATTACTTTTTTGCAATTTCATATGATCAATCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAG‑aaaaaaa > 1:4505270/1‑99 (MQ=255) cTTTTTTGCACTTTCATATGATCAATCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTg > 1:6569968/1‑100 (MQ=255) cTTTTTTGCAATTTCATATGATCAATCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTg > 1:5383076/1‑100 (MQ=255) aTCTATCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTa < 1:6240647/100‑1 (MQ=255) taTCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATa > 1:5404862/2‑100 (MQ=255) aTCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAG‑AAAAAATATTGTCAAACGTAGCAATGTTGTAATACa > 1:5642219/1‑100 (MQ=255) tCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACa > 1:6611520/1‑100 (MQ=255) ccccTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAG‑AAAAAATATTGTCAAATGTAGCAATGTTGTAATACAat > 1:4726054/1‑100 (MQ=255) ccTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACAata > 1:2779040/1‑100 (MQ=255) cTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACAatat < 1:5159045/100‑1 (MQ=255) tataCAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAg > 1:6229421/1‑100 (MQ=255) ataCAATTAAATGGAAAATAGTGATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAGc > 1:1795532/1‑100 (MQ=255) aGTGATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAGCATGAATTGCAATCTGTCGt > 1:824979/1‑100 (MQ=255) gTGATAATTACAAAG‑AAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAGCATGAATTGCAATCTGTCGTgg < 1:831035/100‑1 (MQ=255) gATAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAGCATGAATTGCAATCTGTCGTGGa > 1:4037639/1‑100 (MQ=255) ctAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAGCATGAATTGCAATCTGTCGTGGaa > 1:750864/2‑100 (MQ=255) tAATTACAAAGAAAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAGCATGAATTGCAATCTGTCGTGGaaa < 1:3887235/100‑1 (MQ=255) | GATTACTTTTTTGCAATTTCATATGATCAATCCCCTTTATTTTAATATGTCATTAATTATACAATTAAATGGAAAATAGTGATAATTACAAAG‑AAAAAATATTGTCAAATGTAGCAATGTTGTAATACAATATAGAAACTTTTTACGAATATTTAGCATGAATTGCAATCTGTCGTGGAAA > NC_007793/754187‑754367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |