| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,086,580 | (TA)4→3 | intergenic (‑369/‑315) | SAUSA300_RS10525 ← / → SAUSA300_RS10530 | hypothetical protein/chemotaxis inhibitory protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,086,573 | 0 | A | . | 96.3% | 92.5 / ‑2.1 | 27 | intergenic (‑362/‑323) | SAUSA300_RS10525/SAUSA300_RS10530 | hypothetical protein/chemotaxis inhibitory protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (1/25); total (1/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
| * | NC_007793 | 2,086,574 | 0 | T | . | 96.3% | 92.5 / ‑2.6 | 27 | intergenic (‑363/‑322) | SAUSA300_RS10525/SAUSA300_RS10530 | hypothetical protein/chemotaxis inhibitory protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (1/25); minor base A (0/1); total (1/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
AAAAATGAAAGGCGCTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCTAA > NC_007793/2086482‑2086649 || aaaaaTGAAAGGCGCTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAagatatagg < 1:896303/100‑3 (MQ=255) aTGAAAGGCGCTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAatatatagcacaa < 1:366122/100‑7 (MQ=255) aaaaCGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAga > 1:2972268/1‑99 (MQ=255) aaaCGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGGAgat < 1:865131/100‑3 (MQ=255) aaaCGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGGAgat < 1:4260502/100‑3 (MQ=255) ggTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATgg < 1:2732294/100‑2 (MQ=255) tAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAAt < 1:4976596/100‑1 (MQ=255) aTTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCt < 1:399693/100‑1 (MQ=255) aTTGCATCATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCt < 1:1460353/100‑1 (MQ=37) ttGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtg < 1:6184213/100‑1 (MQ=255) ttGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtg < 1:2923067/100‑1 (MQ=255) tGCGTTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtgt < 1:1823606/100‑1 (MQ=37) tGCGTTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtgt < 1:2899271/100‑1 (MQ=37) tGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtgt < 1:3280545/100‑1 (MQ=255) tGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtga < 1:379126/100‑2 (MQ=255) tGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtga < 1:2539259/100‑2 (MQ=255) tGCATTATCTAATTTTATGTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtgg < 1:4085137/100‑2 (MQ=37) gCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtggt < 1:1258987/100‑3 (MQ=255) ttatctaattttatctaattAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCt < 1:4981794/100‑1 (MQ=25) ttATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCt < 1:2544491/100‑1 (MQ=255) ttATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCt < 1:1881020/100‑1 (MQ=255) ttATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCt < 1:1826910/100‑1 (MQ=255) tATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACATATTGCTGTGTCtg < 1:5084630/100‑2 (MQ=25) tATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCtg < 1:5382419/100‑2 (MQ=255) tATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCtg < 1:757550/100‑2 (MQ=255) tATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCTa < 1:2606884/100‑1 (MQ=255) aTCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCtgg < 1:1192279/100‑3 (MQ=255) aTCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCtgg < 1:5893063/100‑3 (MQ=255) tCTAAATTTATTTAATTAAAACAAAAATATA‑AGCAAAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCTag < 1:4322220/100‑2 (MQ=25) || AAAAATGAAAGGCGCTCCTTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCTAA > NC_007793/2086482‑2086649 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |