| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,381,407 | Δ7 bp | intergenic (+434/‑41) | SAUSA300_RS06815 → / → SAUSA300_RS06820 | AI‑2E family transporter/phosphatidylglycerol lysyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,381,402 | 0 | T | . | 95.7% | 76.6 / ‑2.0 | 23 | intergenic (+429/‑52) | SAUSA300_RS06815/SAUSA300_RS06820 | AI‑2E family transporter/phosphatidylglycerol lysyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (22/0); total (23/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
| * | NC_007793 | 1,381,403 | 0 | A | . | 95.7% | 77.3 / ‑2.5 | 23 | intergenic (+430/‑51) | SAUSA300_RS06815/SAUSA300_RS06820 | AI‑2E family transporter/phosphatidylglycerol lysyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (22/0); total (23/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_007793 | 1,381,404 | 0 | T | . | 100.0% | 85.9 / NA | 23 | intergenic (+431/‑50) | SAUSA300_RS06815/SAUSA300_RS06820 | AI‑2E family transporter/phosphatidylglycerol lysyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (23/0); total (23/0) | |||||||||||
| * | NC_007793 | 1,381,405 | 0 | A | . | 100.0% | 85.9 / NA | 23 | intergenic (+432/‑49) | SAUSA300_RS06815/SAUSA300_RS06820 | AI‑2E family transporter/phosphatidylglycerol lysyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (23/0); total (23/0) | |||||||||||
| * | NC_007793 | 1,381,406 | 0 | T | . | 100.0% | 85.9 / NA | 23 | intergenic (+433/‑48) | SAUSA300_RS06815/SAUSA300_RS06820 | AI‑2E family transporter/phosphatidylglycerol lysyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (23/0); total (23/0) | |||||||||||
| * | NC_007793 | 1,381,407 | 0 | G | . | 100.0% | 85.9 / NA | 23 | intergenic (+434/‑47) | SAUSA300_RS06815/SAUSA300_RS06820 | AI‑2E family transporter/phosphatidylglycerol lysyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (23/0); total (23/0) | |||||||||||
| * | NC_007793 | 1,381,408 | 0 | A | . | 100.0% | 85.9 / NA | 23 | intergenic (+435/‑46) | SAUSA300_RS06815/SAUSA300_RS06820 | AI‑2E family transporter/phosphatidylglycerol lysyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (23/0); total (23/0) | |||||||||||
CTTAATACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTTTATATGATATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAAAATGAATCAGGAAGTTAAAAACAAA > NC_007793/1381331‑1381477 ||||||| cttAATACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTa > 1:5624973/1‑100 (MQ=255) accctACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAg > 1:902045/5‑100 (MQ=255) tAATACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGa > 1:4720517/1‑100 (MQ=255) tAATACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGa > 1:3737406/1‑100 (MQ=255) tAATACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGa > 1:1436148/1‑100 (MQ=255) tAATACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGa > 1:3477260/1‑100 (MQ=255) aaTACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGaa > 1:2963641/1‑100 (MQ=255) aaaCAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAAt > 1:2425012/3‑100 (MQ=255) aTACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAAt > 1:3398409/1‑100 (MQ=255) tACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAAtt > 1:3985954/1‑100 (MQ=255) aCAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTg > 1:4693672/1‑100 (MQ=255) aCAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTg > 1:3428272/1‑100 (MQ=255) aCAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTg > 1:2373187/1‑100 (MQ=255) cgATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTGAt > 1:3795224/2‑100 (MQ=255) gctatGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGTATTGATGTGaaaa > 1:2813868/3‑100 (MQ=255) atatGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGaaaaa > 1:2604589/1‑100 (MQ=255) atGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAAAAt > 1:804236/1‑100 (MQ=255) atGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCCATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAGAAt > 1:3614654/1‑100 (MQ=255) tGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAAAATg > 1:4048029/1‑100 (MQ=255) gACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAAAATGa > 1:4159386/1‑100 (MQ=255) gACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAAAATGa > 1:5831631/1‑100 (MQ=255) gACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTT‑‑‑‑‑‑‑TATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAAAATGa > 1:2702909/1‑100 (MQ=255) cAAAGGTAAATGATATGCTATTTTTATGGTTTA‑‑‑‑‑‑A‑ATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAAAATGAATCAGGAAGTTAAAAACaaa > 1:1545107/1‑100 (MQ=255) ||||||| CTTAATACAGATATCAATATGACAAAAGTGTTATATAAATCAAAGGTAAATGATATGCTATTTTTATGGTTTATATGATATATTTTGATTTATAACAGAAATAATTAGAATTGATGTGAAAAAATGAATCAGGAAGTTAAAAACAAA > NC_007793/1381331‑1381477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |