| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 90,315 | (TA)8→6 | coding (870‑873/1752 nt) | SAUSA300_RS00415 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 90,302 | 0 | A | . | 100.0% | 110.4 / NA | 29 | coding (857/1752 nt) | SAUSA300_RS00415 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (28/1); total (28/1) | |||||||||||
| * | NC_007793 | 90,303 | 0 | T | . | 100.0% | 110.4 / NA | 29 | coding (858/1752 nt) | SAUSA300_RS00415 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (28/1); total (28/1) | |||||||||||
| * | NC_007793 | 90,304 | 0 | A | . | 100.0% | 110.4 / NA | 29 | coding (859/1752 nt) | SAUSA300_RS00415 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (28/1); total (28/1) | |||||||||||
| * | NC_007793 | 90,305 | 0 | T | . | 100.0% | 110.4 / NA | 29 | coding (860/1752 nt) | SAUSA300_RS00415 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (28/1); total (28/1) | |||||||||||
TTCAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAATATATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAATAG > NC_007793/90213‑90391 |||| ttcAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatata > 1:3538830/1‑100 (MQ=255) tcAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatat > 1:4807472/1‑100 (MQ=255) tcAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatat > 1:1617979/1‑100 (MQ=255) aCTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatataaatt > 1:4294645/1‑99 (MQ=255) aCAGAAAATATATCTATAGATATATCAAGGTTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatataaattc > 1:3800881/1‑98 (MQ=255) aCAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatataaattc > 1:4305822/1‑98 (MQ=255) aCAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatataaattc > 1:3129749/1‑98 (MQ=255) cTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAaataat > 1:706891/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:5429705/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:494244/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:4939618/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:3950219/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:4201936/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:1818278/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGAAGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:3797830/1‑100 (MQ=255) tatatCAAGATTTTTAGTACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTag < 1:4108463/100‑1 (MQ=255) atCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAgaga > 1:1902571/1‑100 (MQ=255) tCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGAc > 1:1325684/1‑100 (MQ=255) ctAGAACTAAGTAATATGATACTCTTGCTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGc > 1:464335/2‑100 (MQ=255) aaGTAATATGATACTCTTGTTAGATGATATTCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATc > 1:2721000/1‑100 (MQ=255) aaGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACttaga > 1:3329425/1‑96 (MQ=255) aaGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATc > 1:1995831/1‑100 (MQ=255) aaGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACAGATc > 1:552216/1‑100 (MQ=255) aaGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACAGATc > 1:5973942/1‑100 (MQ=255) atGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGt > 1:1287101/1‑100 (MQ=255) gATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTg > 1:241334/1‑100 (MQ=255) agccctTGTTAGATGATATGCACGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGTTGCGACTGATCCTGAAGttcgt > 1:4388232/5‑97 (MQ=255) ctTGTTAGATGATATGCTCGACTTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTTATGCGACTGATCCTGAAGTTGTTTACa > 1:6498927/1‑100 (MQ=255) ctTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACa > 1:4789451/1‑100 (MQ=255) tGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATc > 1:5286690/1‑100 (MQ=255) tAGATGATATGCTCGACGACA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACt > 1:3544475/1‑100 (MQ=255) caGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACt > 1:6084028/2‑100 (MQ=255) ccatgatATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTg > 1:4819421/3‑100 (MQ=255) atgatATGCTCGACGTCA‑‑‑‑ATATATATATATAACTTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGaa > 1:6509331/1‑100 (MQ=255) atgatATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGaa > 1:6598846/1‑100 (MQ=255) tatGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAATAg > 1:5775389/1‑100 (MQ=255) |||| TTCAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAATATATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAATAG > NC_007793/90213‑90391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |