| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 613,711 | Δ1 bp | coding (2565/2844 nt) | SAUSA300_RS02915 → | serine‑aspartate repeat‑containing protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 613,711 | 0 | C | . | 81.8% | 33.3 / 26.1 | 36 | coding (2565/2844 nt) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| Reads supporting (aligned to +/- strand): ref base C (3/0); major base . (27/0); minor base T (6/0); total (36/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01 | |||||||||||
CAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCGA > NC_007793/613617‑613794 | cagacgcagatAGCGATTCAGATGCGGACAGCGACTCAGATTCAGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGACGCGGa > 1:2130337/1‑100 (MQ=11) ctccgcggacAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATGCAGA‑TCGGaag > 1:6605265/8‑98 (MQ=11) atgcccagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGA‑TCGGaag > 1:3818607/6‑98 (MQ=14) agacgcagatAGCGATTCAGATTCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGACGCGGac > 1:2331136/1‑99 (MQ=11) aggccgacAGTGATTCCGACTCAGATAGCGATTCCGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGATTCAGACAGTGAATCAGA‑TCGGaagag > 1:2578390/6‑96 (MQ=14) ctttgacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCAGATTCAGACAGAGACTCAGA‑TCGGaagagc > 1:4978124/5‑95 (MQ=14) ccagatAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGAGACTCAGA‑TCGGaagagca > 1:712201/2‑94 (MQ=2) ccagacAGTGACTCGGACTCAGACAGTGATCCAGACTCAGATAGCGATTCAGACTCAGATAGCGATTCAGACTCAGACAGTGATTCAGA‑TCGGaagagca > 1:837181/2‑94 (MQ=17) tggacAGCGACCCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCAACTCAGA‑TCGGaagagcac > 1:1974704/3‑93 (MQ=1) cagatAGTGAGTCAGATTCAGACAGTGACTCGGACTCAGACAGTGATTCAGACTCAGATAGCGATTCAGACTCAGATAGCGATTCAGA‑TCGGaagagcac > 1:2063664/1‑93 (MQ=17) cagatAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGGCAGCAACTCAGA‑TCGGaagagcac > 1:914503/1‑93 (MQ=2) cagatAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGA‑TCGGaagagcac > 1:3239038/1‑93 (MQ=11) cagatAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGA‑TCGGaagagcac > 1:3774857/1‑93 (MQ=11) cagatAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGTGACTCAGA‑TCGGaagagcac > 1:6563090/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGACTCAGACAGCga > 1:1741889/1‑100 (MQ=11) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCACCTCAGA‑TCGGaagagcac > 1:724312/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGAAACTCAGA‑TCGGaagagcac > 1:2807724/1‑93 (MQ=14) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGA‑TCGGaagagcac > 1:963493/1‑93 (MQ=17) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTAATTCAGA‑TCGGaagagcac > 1:3762183/1‑93 (MQ=17) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGAGATACAGA‑TCGGaagagcac > 1:3424156/1‑93 (MQ=17) cagacAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTGAGACGCAGATAGTGAGGCAGA‑TCGGaagagcac > 1:4661319/1‑93 (MQ=0) cagacAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:2537739/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTGAGACAGCGACCCAGA‑TCGGaagagcac > 1:2277376/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAAATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:1037991/1‑93 (MQ=11) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGTGACTCAGA‑TCGGaagacaca > 1:2781751/1‑93 (MQ=14) tgacAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGA‑TCAGA‑TCGGaagagcacac > 1:3649318/2‑91 (MQ=11) ggacAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGTGATTCAGA‑TCGGaagagcaca > 1:5994167/2‑92 (MQ=0) agatAGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGTCGCAGA‑TCGGaagagcaca > 1:1342865/1‑92 (MQ=2) agacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCAACTCAGA‑TCGGaagagcaca > 1:1769019/1‑92 (MQ=14) agacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGTGACTCAGA‑TCGGaagagcaca > 1:3104112/1‑92 (MQ=14) acataGCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGat > 1:2656293/5‑99 (MQ=0) aggCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATtca > 1:2843547/3‑100 (MQ=2) cGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATtcagac > 1:706507/1‑99 (MQ=11) agACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATtcagac > 1:5122102/2‑99 (MQ=2) ctctGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATtcagacgca > 1:4784566/1‑96 (MQ=2) ctctGATGCGGACAGCGACTCAGACGCAGATAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGATTCAGACAGCGATtcagacgca > 1:5357536/1‑96 (MQ=2) ttatgcggacagcgactcagacgcagatagcgactcagacgcagatagcgactctgatgcGGACAGCGACTCAGATTCAGACAGCGATtcagacgcagat > 1:1824168/11‑100 (MQ=2) tgatgcggacagcgactcagacgcagatagcgactcagacgcagatagcgactctgatgcGGACAGCGACTCAGATTCAGACAGCGATtcagacgcagat > 1:5473618/11‑100 (MQ=2) tgatgcggacagcgactcagacgcagatagcgactcagacgcagatagcgactctgatgcGGACAGCGACTCAGATTCAGACAGCGATtcagacgcagat > 1:1663995/11‑100 (MQ=2) tgatgcggacagcgactcagacgcagatagcgactcagacgcagatagcgactctgatgcGGACAGCGACTCAGATTCAGACAGCGATtcagacgcagat > 1:5600531/11‑100 (MQ=2) atccgcggacagcgactcagacgcagatagcgactcagacgcagatagcgactctgatgcGGACAGCGACTCAGATTCAGACAGCGATtcagacgcagat > 1:2077409/11‑100 (MQ=2) gatgcggacagcgactcagacgcagatagcgaatcagacgcagatagcgactctgacgcGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATa > 1:1187030/10‑100 (MQ=0) tgcggacagcgactcagacgcagatagcgactcagacgcagatagcgactctgatgcGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGc > 1:5218559/8‑100 (MQ=11) agacagcgactcagattcagatagcgactcagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGAt > 1:5798305/1‑100 (MQ=255) agacagcgactcagattcagatagcgactcagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGAt > 1:3670916/1‑100 (MQ=255) acacagcgactcagacgcagatagcgattcagacgcagatagcgactctgatgcGGACAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGAt > 1:4721390/5‑100 (MQ=11) aacagacgcagatagcgattcagactcagacagcgactcagacgcAGATAGCGATTCAGATTCAGACAGCGATTCAGACGCAGATAGCGATTCTGatgcg > 1:856294/3‑96 (MQ=1) cagacgcagatagcgactcagacgcagatagcgactctgatgcGGATAGCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCTGatgcgga > 1:1773206/1‑94 (MQ=11) cagatagcgactcagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGa > 1:3515612/1‑100 (MQ=255) cagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACtcagatcggaa > 1:1013441/1‑95 (MQ=255) cactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACAACtcagatcggaaga > 1:2478895/2‑93 (MQ=17) tcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCg > 1:838247/1‑100 (MQ=255) cagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCga > 1:6093214/1‑100 (MQ=255) cagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCga > 1:2478560/1‑100 (MQ=255) cagatagcgactcagactcGGATAGCGATCTAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCATATAGCga > 1:885928/1‑100 (MQ=255) | CAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAGATTCAGATAGCGA > NC_007793/613617‑613794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |