| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007790 | 1,871 | C→A | intergenic (+104/+222) | SAUSA300_RS14710 → / ← SAUSA300_RS14715 | membrane protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,871 | 0 | C | A | 97.3% | 98.4 / ‑4.4 | 37 | intergenic (+104/+222) | SAUSA300_RS14710/SAUSA300_RS14715 | membrane protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (34/2); minor base T (1/0); total (35/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
TGAGGGGATTTTGAAACGAGTTTCTTCTTGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTG‑ATGTTGAGAAGA > NC_007790/1774‑1965 | tGAGAGGATTTTGAAACGAGTTTCTTCTTGTTTTCGCACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGAtt > 1:3758026/1‑100 (MQ=255) ccaggATTTTGAAACGAGTTTCTTCTTGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGAttct > 1:5878961/4‑98 (MQ=255) aaggATTTTGAAACGAGTTTCTTCTTGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGAttgag > 1:4063017/3‑97 (MQ=255) ctGAAACGAGTTTCTTCTTGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑gagga > 1:1628279/2‑98 (MQ=255) tGAAACGAGTTTCTTCTTGTTTTCACACTG‑TTTTTTTATTCCTATTGGGGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAtc > 1:2065016/1‑99 (MQ=255) cttcttGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTCG‑GAA‑GAGATCGgaagagcacac > 1:3980210/1‑94 (MQ=255) tcttGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTAT‑GAC‑GAGATCGgaagagcacacgt > 1:198960/1‑92 (MQ=255) tcttGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTAT‑AAC‑GAGATCGgaagagcacacgt > 1:4808686/1‑92 (MQ=255) cttGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GCA‑GAGATCGgaagagcacacgtc > 1:1294186/1‑91 (MQ=255) tGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTTGGGC‑GAGATCGgaagagcacacgtct > 1:174819/1‑90 (MQ=255) tGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GACTGAGATCGgaagagcacacgtct > 1:1423139/1‑90 (MQ=255) tGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTa > 1:5084974/1‑100 (MQ=255) tttCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCa > 1:265122/1‑100 (MQ=255) ttccacaCTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCa > 1:1278699/4‑100 (MQ=255) ttCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCAt > 1:5103095/1‑100 (MQ=255) cacaCTGTTTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAT‑GAGAT‑GGAAGAAAAATATGATTATCATg > 1:1684560/1‑100 (MQ=255) cacaCTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGa > 1:3140259/1‑100 (MQ=255) gcacTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGaa > 1:6064712/2‑100 (MQ=255) cacTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAg > 1:3668286/1‑100 (MQ=255) tgccTATTGGTGTTGTTGCTTACTTTTTGTTTTTTTTTAAAGATGATGTTTTT‑GCC‑GAGAT‑GGAAGAAAATTTTAATAATCTTGAGGTTAATAAAAAATa > 1:3774422/3‑100 (MQ=255) gtgcTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGACGAAAAATATGATTATCATGAAGATAATAAAAAATa > 1:6101819/4‑100 (MQ=255) aTTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAgacga > 1:3166623/1‑100 (MQ=255) gttgttGCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCAtt > 1:1869299/1‑100 (MQ=255) gttgCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTAt > 1:1976042/1‑100 (MQ=255) tgCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGc > 1:5959963/1‑100 (MQ=255) gCTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGGCGACGCATTTATGcc > 1:1183370/1‑100 (MQ=255) tgtACTTTTTGTTTTTCTATAAAGATGCTGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCg > 1:5939160/3‑100 (MQ=255) cTTACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCg > 1:4425457/1‑100 (MQ=255) tACTTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GCGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCgag > 1:1861475/1‑100 (MQ=255) tACCTTTTGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCgag > 1:2275987/1‑100 (MQ=255) ttttGTTTTTCTATAAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGaaaa > 1:2383270/1‑100 (MQ=255) ataAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTgtgcgt > 1:3894987/1‑95 (MQ=255) ataAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTgtgcgt > 1:4109451/1‑95 (MQ=255) ataAAGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTgtgcgt > 1:4447403/1‑95 (MQ=255) aaaGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTgtgcgttg < 1:3822129/100‑8 (MQ=255) aaaGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTgtgcgtcg < 1:2906812/100‑8 (MQ=255) aaGATGATGATTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTgtgcgtaga > 1:652072/1‑92 (MQ=255) gatgatgatTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTgtgcatagatc > 1:4225092/1‑90 (MQ=255) gatgatTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGTGCGTTGagaaga < 1:125353/100‑1 (MQ=255) gatgatTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGTGCGTTGagaaga > 1:1030939/1‑100 (MQ=255) | TGAGGGGATTTTGAAACGAGTTTCTTCTTGTTTTCACACTG‑TTTTTTTATTCCTATTGGTGTTGTTGCTTACTTTTTGTTTTTCTATAAAGATGATGCTTTT‑GAC‑GAGAT‑GGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTG‑ATGTTGAGAAGA > NC_007790/1774‑1965 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |