| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007790 | 1,572 | G→C | intergenic (+576/‑7) | SAUSA300_RS14705 → / → SAUSA300_RS14710 | replication protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,572 | 0 | G | C | 91.3% | 50.3 / ‑0.3 | 23 | intergenic (+576/‑7) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base C (16/5); total (16/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.30e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
CCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTACTTGGA > NC_007790/1479‑1650 | accccTAAATCTTTAAAATACCCCCTTAAAATTCAAAATAAAGGAATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTAtt > 1:4710401/2‑100 (MQ=255) cccTAAATCTTTAAAATACCCCCTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTAtttt > 1:3067122/1‑100 (MQ=255) tcTAAATCTTTAAAATACCCTCTTAAAATTCAAAATAAAGGTGTTTATAATTTGAATAAGTCCTGAGATAAAGTTTTTT‑‑AAAAGGAGTGGTT‑TTTTGaag < 1:5393523/99‑2 (MQ=255) tcTTTAAAATACCCTCTTAAAATTCAAAATAAAGGTGTTTATAATTTGAATAAGTCCTGAGATAAAGTTTTTT‑‑AAAAGGAGTGGTT‑TTTTGaagaggttt < 1:3011904/99‑8 (MQ=255) aTACCCCCTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAgt > 1:3990512/1‑100 (MQ=255) aCCCCCTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAgtgt < 1:5902710/100‑1 (MQ=255) cccccTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGtt < 1:2420925/100‑1 (MQ=255) cccccTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGtt < 1:3132748/100‑1 (MQ=255) cccccTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGtt < 1:5039293/100‑1 (MQ=255) aaaTAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGt < 1:950307/100‑1 (MQ=255) ggTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCa > 1:2607006/1‑100 (MQ=255) gTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATATTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGttt > 1:6066737/1‑100 (MQ=255) aaGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTc > 1:1228287/1‑100 (MQ=255) cTTGTGATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCtttt > 1:595129/1‑100 (MQ=255) ctgtgATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCttttt > 1:3979953/2‑100 (MQ=255) tgtgATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACGCCGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTa > 1:6102128/1‑100 (MQ=255) tgtgATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTa > 1:4560922/1‑100 (MQ=255) tgtgATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTa > 1:588003/1‑100 (MQ=255) tgtgATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTa > 1:2182066/1‑100 (MQ=255) gtgATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTAc > 1:4162163/1‑100 (MQ=255) tgATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTACt > 1:734205/1‑100 (MQ=255) gATAAAGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTACtt > 1:1226096/1‑100 (MQ=255) aaaGTTTTTTAAAAAAGGAGTCTTTATTTTGAATAAAGACACAGTGTTAGATAAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTACTTGGa > 1:3919042/1‑100 (MQ=255) | CCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTTTTACTTGGA > NC_007790/1479‑1650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |