| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007790 | 1,236 | T→C | intergenic (+240/‑343) | SAUSA300_RS14705 → / → SAUSA300_RS14710 | replication protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,236 | 0 | T | C | 100.0% | 18.5 / NA | 9 | intergenic (+240/‑343) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/0); total (9/0) | |||||||||||
ATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACAT‑GTGGAAGTTTTAAAGGATTTTATGC > NC_007790/1139‑1326 | atCACTTTAAAATTACTTAAAACCCTTAGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGCTAGCAAATTCTCCTTATGCTCTTACAGAGttctt > 1:4600875/1‑100 (MQ=255)atCACTTTAAAATTACTTAAAACCCTTAGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACAGAGttctt < 1:2396706/100‑1 (MQ=255) aaCCCTTAGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACAGAGTTCTTAGAGATAAATTAAAAATtct > 1:1059830/1‑100 (MQ=255) ttGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACAGAGTTCTTAGAGATAAATTAAAAATTCTCGATTTTTGATAAAAAACGc > 1:431147/1‑100 (MQ=255) tGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACAGAGTTCTTAGAGATAAATTAAAAATTCTCGATTTTTGATAAAAAACGct > 1:5751880/1‑99 (MQ=255) acgtagttACGGAGTTCTTAGAGAAAAAATAAAAATTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGAt > 1:4691524/7‑100 (MQ=255) gtagttACGGAGTTCTTAGAGAAAAAATAAAAATTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGCAGTTTTACAGGAttt > 1:647344/5‑100 (MQ=255) agttACGGAGTTCTTAGAGAAAAAATAAAACTTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTa > 1:5871432/3‑100 (MQ=255) gttgcGGAGTTCTTAGAGAAAAAATAAAAATTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTAt > 1:1958292/5‑100 (MQ=255) tACAGAGTTCTTAGAGATAAATTAAAAATTCTCGATTTTTGATAAAAACCGCTCTGCAGGAATTTAGAAAAACAC‑GGGAAAGTTTTAAAGGATTTTATGc > 1:4018663/1‑100 (MQ=255) caCGGAGTTCTTAGAGAAAAAATAAAAATTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGc > 1:4617800/2‑100 (MQ=255) | ATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACAT‑GTGGAAGTTTTAAAGGATTTTATGC > NC_007790/1139‑1326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |