D17 :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007790	951	C→A	T224T (ACC→ACA)	SAUSA300_RS14705 →	replication protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007790	951	0	C	A	100.0%	446.0 / NA	158	T224T (ACC→ACA)	SAUSA300_RS14705	replication protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (149/9); total (149/9)

Only 100 of 158 total aligned reads displayed.

AAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGAC  >  NC_007790/854‑1003

aaaTTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAACAACAGGCGAAGAGGAAAAAGCACATTCAATTACAGc                                                    <  1:2537692/100‑1 (MQ=255)

aaaTTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGc                                                    <  1:67468/100‑1 (MQ=255)

aaaTTTTAAACCTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGc                                                    <  1:3032440/100‑1 (MQ=255)

     tgcaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAAttt                                               >  1:3420370/4‑100 (MQ=255)

     gtAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATAACAGCagatc                                               >  1:4357691/2‑96 (MQ=255)

      tAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTg                                              >  1:1263688/1‑100 (MQ=255)

       aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                             >  1:2795202/1‑100 (MQ=255)

       aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                             >  1:3472105/1‑100 (MQ=255)

        aatttAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAACAACAGACGAAGAGGAAAAAGCACATTCAATTACAGCAATTGGGa                                            <  1:5403151/97‑1 (MQ=255)

        aaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACCTGGa                                            <  1:4016796/100‑1 (MQ=255)

          tctAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaag                                          >  1:3570474/3‑99 (MQ=255)

          cctAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAt                                          >  1:2430823/3‑100 (MQ=255)

           ctAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAtt                                         >  1:4243546/2‑100 (MQ=255)

            tagataaTGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAACAACAGACGAAGAGGAAAAAGCACATTCAATTACAGCAATTTGGaaaga                                        >  1:854811/7‑97 (MQ=255)

            tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGGCAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAttt                                        >  1:1560553/1‑100 (MQ=255)

            tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTCGGaaaga                                        >  1:3867342/1‑97 (MQ=255)

            tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATATGGaaaga                                        >  1:1696359/1‑97 (MQ=255)

            tAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaagat                                        >  1:4929895/1‑97 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGCAAAAGCACATTCGAGTACAGCAATTTGGaaagat                                       >  1:4810170/1‑96 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                       >  1:1092286/1‑100 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                       >  1:3794685/1‑100 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                       >  1:2522490/1‑100 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                       >  1:2803879/1‑100 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                       >  1:2297695/1‑100 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                       >  1:3955533/1‑100 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                       >  1:5020194/1‑100 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                                       >  1:1596637/1‑100 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATGTGGaagatc                                       >  1:5246746/1‑96 (MQ=255)

             aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAACAAttagatcggaa                                       >  1:5975722/1‑91 (MQ=255)

              gACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCg                                      >  1:1419696/1‑100 (MQ=255)

               tgtgtgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGa                                     >  1:2807889/8‑100 (MQ=255)

               ccGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGa                                     >  1:460131/2‑100 (MQ=255)

               aCGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGa                                     >  1:1771274/1‑100 (MQ=255)

                tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaagatcgga                                    >  1:4307438/2‑93 (MQ=255)

                tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATCTGGaagatcgga                                    >  1:665972/2‑93 (MQ=255)

                tcaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                    >  1:3268443/3‑100 (MQ=255)

                taaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                    >  1:2633697/3‑100 (MQ=255)

                ctaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATCTGGaaagatcgg                                    >  1:924747/3‑93 (MQ=255)

                caaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                    >  1:6006805/3‑100 (MQ=255)

                cGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                                    >  1:154138/1‑100 (MQ=255)

                 taTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGatagatcgga                                   >  1:4178218/2‑91 (MQ=255)

                 gATGCCGAAGATGGTAATTTGATTAATGCAAGCGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:2261059/1‑100 (MQ=255)

                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:1231704/1‑100 (MQ=255)

                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTCCGaaa                                   >  1:5503676/1‑100 (MQ=255)

                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTGGGagatcggaag                                   >  1:812974/1‑91 (MQ=255)

                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTgggagatcggaa                                   >  1:516965/1‑90 (MQ=255)

                 gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaagatcggaa                                   >  1:2688305/1‑92 (MQ=255)

                 gATGCCGAAGATGGGAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGaaagatcggaa                                   >  1:193703/1‑92 (MQ=255)

                 cctgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCGCATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:737149/6‑100 (MQ=255)

                 cctgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:3511204/6‑100 (MQ=255)

                 caTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTAGGaagatcggaa                                   >  1:2125806/2‑92 (MQ=255)

                 atggccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:1639762/6‑100 (MQ=255)

                 actgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:2848606/6‑100 (MQ=255)

                 aaTGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAACAACAGACGAAGAGGAAAAAGCACATTCAATTACAGCAATTTGGaaagatcgga                                   >  1:3811973/2‑92 (MQ=255)

                 aaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:3608250/2‑100 (MQ=255)

                 aaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:289060/2‑100 (MQ=255)

                 aaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                                   >  1:134982/2‑100 (MQ=255)

                  gtgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                  >  1:5798203/5‑100 (MQ=255)

                  aagccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                  >  1:5434575/5‑100 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTGATACAGGTGATGGCGATAGAACGACAGACGAAGGAGAAAAAGCACATTCGATTACAGCAATGGGGaagatcggaag                                  >  1:5267713/1‑91 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGagatcggaaga                                  >  1:2707666/1‑90 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                  >  1:5345404/1‑100 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                  >  1:5688862/1‑100 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                  >  1:1606140/1‑100 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                  >  1:1159522/1‑100 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                                  >  1:1314707/1‑100 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATGTGGaagatcggaag                                  >  1:6016257/1‑91 (MQ=255)

                  aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaagatcggaga                                  >  1:3935401/1‑91 (MQ=255)

                   tgccGAAGATGGGAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                 >  1:4362155/4‑100 (MQ=255)

                   ggccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                 >  1:1488398/4‑100 (MQ=255)

                   agccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                                 >  1:3101964/4‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGGAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:498090/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:4508955/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:5631914/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:387108/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:2591537/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:3721159/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:4069027/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:4247670/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:5884156/3‑100 (MQ=255)

                    gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:2980536/3‑100 (MQ=255)

                    accGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                                >  1:476657/3‑100 (MQ=255)

                     ccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCa                               >  1:197020/2‑100 (MQ=255)

                     ccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCa                               >  1:2498475/2‑100 (MQ=255)

                         tgATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAat                           >  1:4681660/2‑100 (MQ=255)

                          gATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAatt                          >  1:739904/1‑100 (MQ=255)

                           aTGGTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAatta                         >  1:1522638/1‑100 (MQ=255)

                             ggTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                       >  1:4028988/1‑100 (MQ=255)

                             ggTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                       >  1:2094288/1‑100 (MQ=255)

                             ggTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                       >  1:3130811/1‑100 (MQ=255)

                             ggTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                       >  1:1858775/1‑100 (MQ=255)

                             ggTAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                       >  1:4709267/1‑100 (MQ=255)

                             gatAATTTGATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt                       >  1:2919336/3‑100 (MQ=255)

                                     gATTAATACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTaaaa               >  1:4547727/1‑98 (MQ=255)

                                       ccaaTACAAGTGATGAAGATAAAACGACAGACGAAGAAGAAACAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTaaaaaa             >  1:2235784/3‑96 (MQ=255)

                                           gccAAGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTaaaaaatcta         >  1:4185538/3‑92 (MQ=255)

                                              aaGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAtttaagg      >  1:4490604/1‑95 (MQ=255)

                                               aGTGATGAAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAttcaagga     >  1:666961/1‑94 (MQ=255)

                                                  gatgaAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAtttaaggagtt  >  1:4465068/1‑91 (MQ=255)

                                                  gatgaAGATAAAACGACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAtttaaggagca  <  1:3203668/100‑10 (MQ=255)

AAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAACAACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGTTGAC  >  NC_007790/854‑1003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`