D17 :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007790	898	G→A	A207T (GCA→ACA)	SAUSA300_RS14705 →	replication protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007790	898	0	G	A	99.6%	779.0 / ‑5.7	276	A207T (GCA→ACA)	SAUSA300_RS14705	replication protein
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (252/23); total (253/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.40e-01

Only 100 of 276 total aligned reads displayed.

TTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAAC‑AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT  >  NC_007790/801‑994

ggtGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACa                                                                                                 >  1:5717583/3‑100 (MQ=25)

cttGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACa                                                                                                 >  1:3301031/2‑100 (MQ=25)

cctGTATCGAAAACGTATGTTACGTTATGGTGGATTACTTAAAGAAAAGCATAAACTTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACa                                                                                                 >  1:2034025/3‑100 (MQ=25)

actGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACa                                                                                                 >  1:2251445/3‑100 (MQ=25)

 ccctATCGAAAACGTATGTTAAGTTATGGTAGATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACaa                                                                                                >  1:260671/4‑100 (MQ=21)

  tGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAg                                                                                               >  1:2541937/1‑100 (MQ=37)

    tATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGtg                                                                                             <  1:3061383/100‑1 (MQ=37)

       cGAAAACGTATGTTAAGTTATGGTAGATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGtgacg                                                                                          >  1:2010904/1‑98 (MQ=25)

        gAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACATAGACGATGCCGAAGATGGTAATTTGATTAATACAAGtgatga                                                                                         <  1:1373294/100‑1 (MQ=25)

        gAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCACAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGtgatga                                                                                         <  1:4913845/100‑1 (MQ=37)

          aaaCGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAg                                                                                       >  1:1961212/1‑100 (MQ=37)

           taCGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGa                                                                                      >  1:1307960/2‑100 (MQ=255)

           caCGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGa                                                                                      >  1:5524347/2‑100 (MQ=255)

           aaCGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGa                                                                                      >  1:3386570/1‑100 (MQ=38)

           aaCGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGa                                                                                      >  1:2184842/1‑100 (MQ=38)

            aCGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGAt                                                                                     >  1:2272097/1‑100 (MQ=38)

             tgTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATa                                                                                    >  1:5107982/2‑100 (MQ=255)

             cGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATa                                                                                    >  1:5087943/1‑100 (MQ=38)

             cGTATGTTAAGTTATGGTAGATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATa                                                                                    >  1:1025987/1‑100 (MQ=25)

                aTGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATaaaa                                                                                 >  1:1860461/1‑100 (MQ=255)

                        tgaTGGTAGATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAGAC‑AACAGat                                                                        >  1:2367742/3‑99 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAaacgtacagat                                                                        >  1:4805380/1‑92 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAATGC‑GACAGatc                                                                       >  1:4142086/1‑98 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAGAC‑GACAGatc                                                                       >  1:320782/1‑98 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGatc                                                                       >  1:3941171/1‑98 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACg                                                                       >  1:5365005/1‑100 (MQ=255)

                         tATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACg                                                                       >  1:6065205/1‑100 (MQ=255)

                         cctggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAaacgcagatcg                                                                        >  1:2715417/3‑92 (MQ=255)

                         aaTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑AACAGaga                                                                       >  1:2335753/2‑98 (MQ=255)

                          ttggtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAA‑GACAGatcg                                                                      >  1:4570309/2‑97 (MQ=255)

                          aTGGTGGATTACTTAAAGAGAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAATC‑GACAGatcg                                                                      >  1:3880655/1‑97 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTGAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GGCAGatcg                                                                      >  1:2974785/1‑97 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAaactgacagatc                                                                       >  1:5146050/1‑91 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAATGC‑GACAGatcg                                                                      >  1:3510378/1‑97 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAac‑aacaaagat                                                                      >  1:1035788/1‑95 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAACGAACAGatc                                                                       >  1:5842444/1‑98 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGatcg                                                                      >  1:1066781/1‑97 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACga                                                                      <  1:495852/100‑1 (MQ=255)

                          aTGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAAACga                                                                      <  1:4457173/100‑1 (MQ=255)

                            ggtagATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAAC‑AACAGACgaag                                                                    >  1:1187067/1‑100 (MQ=255)

                            cgtggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAGC‑GACAGatcgga                                                                    >  1:1643209/2‑95 (MQ=255)

                               ggATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GAAAGatcggaaga                                                                 >  1:5443939/1‑92 (MQ=255)

                                             aaagCATAAAATTTTAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAAC‑AACAGACGAAGAGGAAAAAGCACATTCa                                                   >  1:4511868/1‑100 (MQ=255)

                                                  aTAAAATTTTAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAGGAAAAAGCACATTCGATTAc                                              <  1:5188321/100‑1 (MQ=255)

                                                     aaaTTTTAAACCTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGc                                           <  1:3032440/100‑1 (MQ=255)

                                                         tttAAATTTAGATAATGTTGAAGATGGTAATTTAATTAATACAAGTGACGAAGATAAAAC‑AACAGACGAAGAGGAAAAAGCACATTCAATTACAGCAAta                                       <  1:3192728/100‑2 (MQ=255)

                                                          gtAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATAACAGCagatc                                      >  1:4357691/2‑96 (MQ=255)

                                                           tAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAAtaag                                     >  1:692560/1‑97 (MQ=255)

                                                           tAAACTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTg                                     >  1:1263688/1‑100 (MQ=255)

                                                            aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                    >  1:3442104/1‑100 (MQ=255)

                                                            aaaCTTAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTgg                                    >  1:2795202/1‑100 (MQ=255)

                                                               tctAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaag                                 >  1:3570474/3‑99 (MQ=255)

                                                                atAGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAGC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAAtt                                >  1:362213/2‑100 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                              >  1:5020194/1‑100 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                              >  1:3794685/1‑100 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                              >  1:2803879/1‑100 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTc                              >  1:3907861/1‑100 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATGTGGaagatc                              >  1:5246746/1‑96 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACTTGGaagatc                              >  1:3317063/1‑96 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAACAAttagatcggaa                              >  1:5975722/1‑91 (MQ=255)

                                                                  aGACGATGCCGAAGATGGTAATTTGATTAATACAAGAGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaagatc                              >  1:6006033/1‑96 (MQ=255)

                                                                   gACGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCg                             >  1:1419696/1‑100 (MQ=255)

                                                                    ccGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGa                            >  1:460131/2‑100 (MQ=255)

                                                                    aCGATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGa                            >  1:2518331/1‑100 (MQ=255)

                                                                     tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGaagatcgga                           >  1:4307438/2‑93 (MQ=255)

                                                                     tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTAGGaagatcgga                           >  1:5410427/2‑93 (MQ=255)

                                                                     tgATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATCTGGaagatcgga                           >  1:665972/2‑93 (MQ=255)

                                                                     gtgtgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaa                           >  1:5744451/7‑100 (MQ=255)

                                                                     ctaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATCTGGaaagatcgg                           >  1:924747/3‑93 (MQ=255)

                                                                     acaTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAACATGGaagatcgga                           >  1:859209/3‑93 (MQ=255)

                                                                      taTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGatagatcgga                          >  1:4178218/2‑91 (MQ=255)

                                                                      gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                          >  1:3999545/1‑100 (MQ=255)

                                                                      gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                          >  1:3815417/1‑100 (MQ=255)

                                                                      gATGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTGGGagatcggaag                          >  1:812974/1‑91 (MQ=255)

                                                                      gATGCCGAAGATGGGAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGaaagatcggaa                          >  1:193703/1‑92 (MQ=255)

                                                                      actgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaa                          >  1:2848606/6‑100 (MQ=255)

                                                                       gtgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                         >  1:4205688/5‑100 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTGATACAGGTGATGGCGATAGAAC‑GACAGACGAAGGAGAAAAAGCACATTCGATTACAGCAATGGGGaagatcggaag                         >  1:5267713/1‑91 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGCTTACAGCAATTTGGAATTTCGaaaa                         >  1:2462169/1‑100 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGCATTTCGaaaa                         >  1:1771898/1‑100 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                         >  1:5345404/1‑100 (MQ=255)

                                                                       aTGCCGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGaaaa                         >  1:1606140/1‑100 (MQ=255)

                                                                        tgccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                        >  1:2683243/4‑100 (MQ=255)

                                                                        ggccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAg                        >  1:1488398/4‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                       >  1:1531417/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                       >  1:4024424/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                       >  1:5631914/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                       >  1:2591537/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                       >  1:4873193/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                       >  1:4247670/3‑100 (MQ=255)

                                                                         gccGAAGATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGc                       >  1:4069027/3‑100 (MQ=255)

                                                                              tgATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAat                  >  1:4681660/2‑100 (MQ=255)

                                                                               gATGGTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAatt                 >  1:739904/1‑100 (MQ=255)

                                                                                  ggTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt              >  1:16931/1‑100 (MQ=255)

                                                                                  ggTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt              >  1:2094288/1‑100 (MQ=255)

                                                                                  ggTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt              >  1:4731078/1‑100 (MQ=255)

                                                                                  ggTAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt              >  1:3130811/1‑100 (MQ=255)

                                                                                  gatAATTTGATTAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAattatt              >  1:2919336/3‑100 (MQ=255)

                                                                                             tAATACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTaaaaaat   >  1:5817114/1‑95 (MQ=255)

                                                                                              aaTACAAGTGATGAAGATAAAAC‑GACAGACGAAGAAGAAAAAGCACATTCGATTACAGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAAAAAtt  >  1:1584261/1‑100 (MQ=255)

TTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGTAATTTGATTAATGCAAGTGATGAAGATAAAAC‑AACAGACGAAGAAGAAAAAGCACATTCAATTACCGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATT  >  NC_007790/801‑994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`