D17 :: BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007790	790	T→C	L171L (TTA→CTA)	SAUSA300_RS14705 →	replication protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007790	790	0	T	C	100.0%	939.4 / NA	360	L171L (TTA→CTA)	SAUSA300_RS14705	replication protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (319/41); total (319/41)

Only 100 of 360 total aligned reads displayed.

CGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATTTTTTAACTGATGATGATG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGT  >  NC_007790/701‑885

gaccAATCAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAGaaaaggt                                                                                       >  1:3737961/4‑97 (MQ=255)

  gctaTCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGtt                                                                                     >  1:3267193/4‑100 (MQ=255)

  gctaTCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGtt                                                                                     >  1:5603125/4‑100 (MQ=255)

  gctaTCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGtt                                                                                     >  1:3393980/4‑100 (MQ=255)

  gctaTCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGtt                                                                                     >  1:2945307/4‑100 (MQ=255)

     ctCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGGGATCTAGAAAAAGGTTTGt                                                                                  >  1:776831/2‑100 (MQ=255)

     cccAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTa                                                                                 >  1:5887239/3‑100 (MQ=255)

     aTCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATGAAAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTg                                                                                   >  1:2803011/1‑100 (MQ=255)

     aTCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGt                                                                                  >  1:1091563/1‑100 (MQ=255)

     aTCAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGt                                                                                  >  1:2336604/1‑100 (MQ=255)

      acagaaggaCATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTAt                                                                                >  1:4196737/8‑100 (MQ=255)

       cAAGGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGTAt                                                                                >  1:2825272/1‑100 (MQ=255)

       cAAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCCAGaaaagatcggaaga                                                                                >  1:5457938/1‑90 (MQ=255)

        atatgggggtCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCg                                                                              >  1:2982748/10‑100 (MQ=255)

           gagaCATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGaaa                                                                           >  1:2530701/1‑100 (MQ=255)

            tgaCATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGaaaa                                                                          >  1:4534128/2‑100 (MQ=255)

            aaacatCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGaaaa                                                                          >  1:2843240/6‑100 (MQ=255)

               catCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGt                                                                       <  1:2112820/98‑1 (MQ=255)

                       ttctccgTTAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGTATCGAAAACGTATGTTaa                                                                >  1:1355200/7‑100 (MQ=25)

                        tgcccgTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAATTTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGt                                                              >  1:4123715/6‑100 (MQ=25)

                        atTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGt                                                              >  1:1238017/1‑100 (MQ=25)

                          tccgTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTa                                                            >  1:1145648/4‑100 (MQ=25)

                             ggggcctcatcTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTAtgg                                                         >  1:4377072/7‑100 (MQ=25)

                               ttccgatcttGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTAtggt                                                        <  1:3754809/91‑1 (MQ=21)

                               tAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTAtggt                                                        <  1:5398156/100‑1 (MQ=25)

                               tAAATCATCTGACTTTTTAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTAtggt                                                        <  1:5911955/100‑1 (MQ=25)

                                  atcatcTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGAt                                                    >  1:4732997/1‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:1066067/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:3331396/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:769675/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:739841/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:2754568/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:3517658/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:5761198/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:5067127/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaa                                             >  1:4485980/4‑100 (MQ=25)

                                         gactttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGACTACTTaa                                             >  1:2620762/4‑100 (MQ=25)

                                         gactttttAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTAGATTGCTTa                                              >  1:67812/4‑100 (MQ=25)

                                         gactttttAACTGATAGCGATG‑AAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTAGATTGCTTa                                              >  1:897014/4‑100 (MQ=25)

                                             ttttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaa                                         >  1:4333931/1‑100 (MQ=25)

                                             ctttAACTGATGACGACGAAAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTaaaga                                          >  1:5591185/2‑98 (MQ=25)

                                               ttAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaa                                       >  1:4991560/1‑100 (MQ=25)

                                                tAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaag                                      >  1:5989366/1‑99 (MQ=25)

                                                tAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaag                                      >  1:187350/1‑99 (MQ=25)

                                                tAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaag                                      >  1:5530561/1‑99 (MQ=25)

                                                tAACTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGCGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaag                                      >  1:6027167/1‑99 (MQ=25)

                                                caaCTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaag                                      >  1:5188375/2‑99 (MQ=25)

                                                aaaCTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaag                                      >  1:2364374/2‑99 (MQ=25)

                                                 taCTGATGACGACA‑AAAAAAATCAAGAAACTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaagc                                     >  1:557317/2‑98 (MQ=21)

                                                 cgcTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaagc                                     >  1:4883555/3‑98 (MQ=25)

                                                 aaCTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaagc                                     >  1:2515016/1‑98 (MQ=25)

                                                 aaCTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGaaaagc                                     >  1:613247/1‑98 (MQ=25)

                                                  aCTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCa                                    >  1:3021319/1‑100 (MQ=25)

                                                   cTGTTGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCAt                                   >  1:1010559/1‑100 (MQ=21)

                                                   cTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTGAAGAAAAGCAt                                   >  1:3646464/1‑100 (MQ=25)

                                                   cTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCAt                                   >  1:4910257/1‑100 (MQ=25)

                                                   cTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCAt                                   >  1:2464909/1‑100 (MQ=25)

                                                   cTGATGACGACG‑AAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCAt                                   >  1:3809079/1‑100 (MQ=25)

                                                    tgatgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGATAAGTTATGGTGGATTACTTAAAGAAAAGCATa                                  >  1:5280613/1‑100 (MQ=25)

                                                    tcccgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGAATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATa                                  >  1:5486142/11‑100 (MQ=255)

                                                    agatgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATa                                  >  1:1623974/2‑100 (MQ=21)

                                                     gatgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaa                                 >  1:808473/1‑100 (MQ=21)

                                                     gatgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaa                                 >  1:1384121/1‑100 (MQ=21)

                                                     gatgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaa                                 >  1:2721919/1‑100 (MQ=21)

                                                     gatgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaa                                 >  1:2678852/1‑100 (MQ=21)

                                                     gatgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaa                                 >  1:2040061/1‑100 (MQ=21)

                                                     gatgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGCTTGTATCGAAAACGACTGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaa                                 >  1:4266193/1‑100 (MQ=255)

                                                     gatgacgacg‑aAAAAAATCAAGAAATTTTAAGAGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaa                                 >  1:4410877/1‑100 (MQ=21)

                                                     gatagcgatg‑aAAAAAATCAAGAAATTATCAGTGATCTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTAGATTGCTTAAACAAAAGCATa                                  >  1:5106741/7‑100 (MQ=25)

                                                      atgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaaa                                >  1:4224464/1‑100 (MQ=21)

                                                      atgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaaa                                >  1:1294213/1‑100 (MQ=21)

                                                      atgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaaa                                >  1:5775599/1‑100 (MQ=21)

                                                      atgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaaa                                >  1:2202386/1‑100 (MQ=21)

                                                       tgacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATaaaa                               >  1:3428990/1‑100 (MQ=21)

                                                        ggcgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAt                              >  1:2961648/7‑100 (MQ=21)

                                                        gacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAt                              >  1:4943038/7‑100 (MQ=21)

                                                        gacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAt                              >  1:1573335/7‑100 (MQ=21)

                                                        gacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAt                              >  1:2169134/7‑100 (MQ=21)

                                                        gacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAt                              >  1:1453126/7‑100 (MQ=21)

                                                        aacgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAt                              >  1:150784/7‑100 (MQ=21)

                                                         acgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAtt                             >  1:6050046/6‑100 (MQ=21)

                                                          cgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAttt                            >  1:3715407/5‑100 (MQ=21)

                                                          cgacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAttt                            >  1:470785/5‑100 (MQ=21)

                                                           gacg‑aAAAAAATCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAAtttt                           >  1:5858239/4‑100 (MQ=21)

                                                                  aaaaaTCAAGGAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACtt                     <  1:4844054/100‑1 (MQ=21)

                                                                  aaaaaTCAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACtt                     <  1:847562/100‑1 (MQ=21)

                                                                        cAAGAAATTTTAAGTGATCTAG‑GAAAGGTTTGGATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGa               >  1:3205416/1‑100 (MQ=21)

                                                                        cAAGAAATTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGa               >  1:4022919/1‑100 (MQ=21)

                                                                              ccacactctGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGa         >  1:1197999/9‑100 (MQ=18)

                                                                              aTTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAATCGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGACGCCGa         <  1:3931392/100‑1 (MQ=255)

                                                                              aTTTTAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCgg         <  1:1953788/100‑2 (MQ=21)

                                                                               ttatcaGTGCTCTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTAGATTGCTTAAACAAAAGCATAAAATTTTAAATTTAGATAATGttgt         <  1:3352698/95‑4 (MQ=18)

                                                                                  tAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGAt     >  1:1671724/1‑100 (MQ=21)

                                                                                  tAAGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGAt     >  1:5219565/1‑100 (MQ=21)

                                                                                   ctgTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATg    >  1:3785068/3‑100 (MQ=21)

                                                                                   aaGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATg    >  1:2068322/1‑100 (MQ=21)

                                                                                   aaGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATg    >  1:4571298/1‑100 (MQ=21)

                                                                                    cgTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATgg   >  1:3111787/2‑100 (MQ=25)

                                                                                    aGTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATgg   >  1:4000163/1‑100 (MQ=21)

                                                                                     gTGATCTAG‑AAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTACTTAAAGAAAAGCATAAAATTTTAAACTTAGACGATGCCGAAGATGGt  <  1:177920/100‑1 (MQ=21)

CGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATTTTTTAACTGATGATGATG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTATCGAAAACGTATGTTAAGTTATGGTGGATTGCTTAAACAAAAACATAAAATTTTAAACTTAGACGATGTCGAAGATGGT  >  NC_007790/701‑885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`