Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007790	103	241	139	11 [9]	[0] 35	–/SAUSA300_RS14705	–/replication protein

GCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGAT  >  NC_007790/3‑126                                                                                                    |                         gCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGagaaaagaaa                          >  1:3390369/1‑100 (MQ=255) gCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGAAAACAACGCCCATGGAGagaaaagaaa                          >  1:2970388/1‑100 (MQ=255)   aaTATAATACTACTAAAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATAAGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAAt                        <  1:1521587/100‑1 (MQ=255)              actaGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTaa             >  1:2845090/1‑100 (MQ=255)              actaGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTaa             >  1:3438525/1‑100 (MQ=255)              actaGAAGTATAACCGAAAACCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTaa             <  1:3196783/100‑1 (MQ=255)                caGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAACATAGAtcggaagagc           >  1:5349157/2‑91 (MQ=255)                     gTATAACCGAAAATCAAGATAATAAGACGTTAAAAGAAATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAggttctg      <  1:1119961/100‑7 (MQ=255)                      tataACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAggttctgt     <  1:4252910/100‑8 (MQ=255)                        taACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAggttctgttg   >  1:2558216/1‑91 (MQ=255)                         aaCCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAggttctgttgc  >  1:415374/1‑90 (MQ=255)                                                                                                    |                         GCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGAT  >  NC_007790/3‑126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑