| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007790 | 1,266 | (T)5→4 | intergenic (+270/‑313) | SAUSA300_RS14705 → / → SAUSA300_RS14710 | replication protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,262 | 0 | T | . | 82.3% | 34.8 / 7.0 | 17 | intergenic (+266/‑317) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (3/0); new base . (5/9); total (8/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.24e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.72e-01 | |||||||||||
TTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACAT‑GTGGAAGTTTTAAAGGATTTTATGCTAATTTTTAATTTGCATGTAAATGGGCA > NC_007790/1179‑1354 | ttGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACAGAGTTCTTAGAGATAAATTAAAAATTCTCGATTTTTGATAAAAAACGc > 1:431147/1‑100 (MQ=255) tGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACAGAGTTCTTAGAGATAAATTAAAAATTCTCGATTTTTGATAAAAAACGct > 1:5751880/1‑99 (MQ=255) acgtagttACGGAGTTCTTAGAGAAAAAATAAAAATTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGAt > 1:4691524/7‑100 (MQ=255) gtagttACGGAGTTCTTAGAGAAAAAATAAAAATTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGCAGTTTTACAGGAttt > 1:647344/5‑100 (MQ=255) agttACGGAGTTCTTAGAGAAAAAATAAAACTTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTa > 1:5871432/3‑100 (MQ=255) gttgcGGAGTTCTTAGAGAAAAAATAAAAATTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTAt > 1:1958292/5‑100 (MQ=255) tACAGAGTTCTTAGAGATAAATTAAAAATTCTCGATTTTTGATAAAAACCGCTCTGCAGGAATTTAGAAAAACAC‑GGGAAAGTTTTAAAGGATTTTATGc > 1:4018663/1‑100 (MQ=255) caCGGAGTTCTTAGAGAAAAAATAAAAATTCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGc > 1:4617800/2‑100 (MQ=255) attCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCATGTAAATGGGc < 1:3226450/100‑1 (MQ=255) attCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCATGTAAATGGGc < 1:3865303/100‑1 (MQ=255) attCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCATGTAAATGGGc < 1:4980665/100‑1 (MQ=255) attCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCATGTAAATGGGc < 1:5422463/100‑1 (MQ=255) attCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCATGTAAATGGGc < 1:5725020/100‑1 (MQ=255) attCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCATGTAAACGGGc < 1:2249750/100‑1 (MQ=255) attCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCAGGGAAATGGGc < 1:1760247/100‑1 (MQ=255) ttCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCATGTAAATGGGCa < 1:2036675/100‑1 (MQ=255) ttCTCGA‑TTTTGATAAAAAATGTCTTGCAGGAATTTAGAAAAACATGGGGGAAGTTTTAAAGGATTTTATGCTAACTTTTAATTTGCATGTAAATGGGCa < 1:1630375/100‑1 (MQ=255) | TTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACAT‑GTGGAAGTTTTAAAGGATTTTATGCTAATTTTTAATTTGCATGTAAATGGGCA > NC_007790/1179‑1354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |