Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007790	672	Δ4 bp	coding (393‑396/717 nt)	SAUSA300_RS14705 →	replication protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007790	672	0	G	.	100.0%	21.9 / NA	7	coding (393/717 nt)	SAUSA300_RS14705	replication protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (7/0);  total (7/0)
*	NC_007790	673	0	A	.	100.0%	21.9 / NA	7	coding (394/717 nt)	SAUSA300_RS14705	replication protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (7/0);  total (7/0)
*	NC_007790	674	0	A	.	100.0%	21.9 / NA	7	coding (395/717 nt)	SAUSA300_RS14705	replication protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (7/0);  total (7/0)
*	NC_007790	675	0	T	.	100.0%	21.9 / NA	7	coding (396/717 nt)	SAUSA300_RS14705	replication protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (7/0);  total (7/0)

ATGGCAAAGAGCATTACAAGTTGACTATCGACCTGTTGCTAATGTTAAAGCGATCAAACCGAATAGAAAAGGCGATAAAGACATTGAATCGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATT  >  NC_007790/612‑745                                                             ||||                                                                       aTGGCAACAAGCATTAAAAGTAAATTATCGACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGAc                               >  1:1468365/1‑100 (MQ=255) aTGGCAACAAGCATTAAAAGTAAATTATCGACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGAc                               >  1:3043883/1‑100 (MQ=255) aTGGCAACAAGCATTAAAAGTAAATTATCGACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGAc                               >  1:5687566/1‑100 (MQ=255)   ggCAACAAGCATTAAAAGTAAATTATCGACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGAcat                             >  1:5963664/1‑98 (MQ=255)   ggCAACAAGCATTAAAAGTAAATTATCGACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGAcag                             >  1:1837706/1‑98 (MQ=255)                      tacttATCGACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGACATCAAAATATTCCGTTAAatc          >  1:2957014/5‑100 (MQ=255)                              gACCTGTCGTAAATATTAAAGCGATCAAACC‑‑‑‑A‑AAAAGGAGATAAAGATATTGCGTCTGCTATCAAGGAGACATCAAAATATTCCGTTAAATCATCTGact  >  1:1477282/1‑98 (MQ=255)                                                             ||||                                                                       ATGGCAAAGAGCATTACAAGTTGACTATCGACCTGTTGCTAATGTTAAAGCGATCAAACCGAATAGAAAAGGCGATAAAGACATTGAATCGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATT  >  NC_007790/612‑745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑