| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,700,617 | C→T | D366N (GAC→AAC) | SAUSA300_RS13870 ← | N‑succinyldiaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,700,617 | 0 | C | T | 94.1% | 43.7 / ‑4.1 | 17 | D366N (GAC→AAC) | SAUSA300_RS13870 | N‑succinyldiaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (6/10); total (6/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 | |||||||||||
TTAATTTTTGTCATTTTAACATCACCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTCATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGCAACAAGTATTGACTTCTCTTGCACTAAAAAT > NC_007793/2700522‑2700711 | ttAATTTTTGTCATTTTAACATCACCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCt < 1:3343488/100‑1 (MQ=255) tCATTTTAACATCACCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCaagg < 1:3460424/100‑3 (MQ=255) tCATTTTAACATCACCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATg < 1:5204385/100‑1 (MQ=255) ccACCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTcaca > 1:3921014/2‑100 (MQ=255) cACCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACAt > 1:311624/1‑100 (MQ=255) cACCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACAt > 1:321423/1‑100 (MQ=255) aCCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATa > 1:1794501/1‑100 (MQ=255) tataAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCag < 1:5943273/100‑2 (MQ=255) taAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAAt < 1:80736/100‑1 (MQ=255) cTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGc < 1:1308409/100‑1 (MQ=255) tGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTCATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGca < 1:5725639/100‑1 (MQ=255) tAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGcaaca < 1:1904941/100‑1 (MQ=255) tAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGcaaca < 1:1809712/100‑1 (MQ=255) tAATCTTATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGcaaca < 1:1481714/100‑1 (MQ=255) tATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGCAACAAGTAtt > 1:2513228/1‑100 (MQ=255) tATTGCAGCTTCGTCTAATTTCTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGCAACAAGTAtt > 1:5212530/1‑100 (MQ=255) cTGGTTATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGCAACAAGTATTGACTTCTCTTGCACTAAaaat < 1:5020177/100‑1 (MQ=255) | TTAATTTTTGTCATTTTAACATCACCCTTAACTTTATTATTCATATAAATATGCTAGTTCTGTTAATCTTATTGCAGCTTCGTCTAATTTCTGGTCATCTAACGCCAATGAAATTCTCACATAACGATTACCATTCTCTCCAAATGGTTTCCCTGGAGCAACAAGTATTGACTTCTCTTGCACTAAAAAT > NC_007793/2700522‑2700711 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |