Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 1,354,028 C→T Y81Y (TAC→TAT)  SAUSA300_RS06705 → secretion protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,354,0280CT100.0% 624.6 / NA 187Y81Y (TAC→TAT) SAUSA300_RS06705secretion protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (167/20);  total (167/20)

Only 100 of 207 total aligned reads displayed.

ATTACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATACAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACAAAATAATAAAGAATA  >  NC_007793/1353931‑1354123
                                                                                                  |                                                                                                
cctACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataa                                                                                                >  1:1815285/3‑100 (MQ=255)
 ctACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataat                                                                                               >  1:3603157/2‑100 (MQ=255)
  tACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataata                                                                                              >  1:2211075/1‑100 (MQ=255)
  tACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataata                                                                                              >  1:5599032/1‑100 (MQ=255)
   aCAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataatac                                                                                             >  1:2691482/1‑100 (MQ=255)
   aCAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataatac                                                                                             >  1:3001954/1‑100 (MQ=255)
   aCAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataatac                                                                                             >  1:1955581/1‑100 (MQ=255)
   aCAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataatac                                                                                             >  1:4202754/1‑100 (MQ=255)
     aataatTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATacac                                                                                           >  1:944359/1‑100 (MQ=255)
        aatTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTa                                                                                        <  1:4356886/100‑1 (MQ=255)
          aggtataATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTaa‑a                                                                                     >  1:2571766/4‑100 (MQ=255)
           cttATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑At                                                                                    >  1:2768162/2‑100 (MQ=255)
             cctaATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTAAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCg                                                                                  >  1:1128559/3‑100 (MQ=255)
              ctggtGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCgg                                                                                 >  1:1655031/5‑100 (MQ=255)
              ataATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCgg                                                                                 >  1:5242278/1‑100 (MQ=255)
               acaTGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGt                                                                                >  1:5214087/3‑100 (MQ=255)
                aaTGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGtt                                                                               >  1:1885753/1‑100 (MQ=255)
                  tGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGt                                                                             >  1:5929726/1‑100 (MQ=255)
                   gATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTa                                                                            >  1:2178150/1‑100 (MQ=255)
                   gATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTa                                                                            >  1:5684620/1‑100 (MQ=255)
                   gATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTa                                                                            >  1:707390/1‑100 (MQ=255)
                    ctAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTaa                                                                           >  1:4751120/2‑100 (MQ=255)
                    cgggcctACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTaa                                                                           >  1:3258246/7‑100 (MQ=255)
                    aTAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTaa                                                                           >  1:1435767/1‑100 (MQ=255)
                      tggctACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:6007615/5‑100 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACCCCTAAGATCggaagagca                                                                          >  1:4288952/1‑93 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:5797076/1‑100 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:4513404/1‑100 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:5412773/1‑100 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:5354745/1‑100 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:242579/1‑100 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:2641299/1‑100 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCAAG‑ATCggaagagcac                                                                         >  1:1217721/1‑92 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCGTTACATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:4918452/1‑100 (MQ=255)
                      aaGTTACATGAAAGATAAAGTTAATGCATTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                         >  1:5825469/1‑100 (MQ=255)
                       ttctACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAGTATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGc                                                                        >  1:743091/4‑100 (MQ=255)
                         ttACATGAAAGATAAAGTTAATGCGTTGTATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAGGGCaa                                                                      <  1:215709/100‑1 (MQ=255)
                         gtACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaa                                                                      >  1:1689219/2‑100 (MQ=255)
                         ctACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaa                                                                      >  1:333571/2‑100 (MQ=255)
                         ctACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaa                                                                      >  1:5636043/2‑100 (MQ=255)
                         atACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTTAAAATC‑AAAAATTAAATATAATACACCT‑A‑ATTGGTTTTAAGGGaaa                                                                     >  1:3222968/2‑100 (MQ=255)
                         atACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAGGGCaa                                                                      >  1:973579/2‑100 (MQ=255)
                          tgcctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaa                                                                     >  1:394246/5‑100 (MQ=255)
                          tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATCATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGctat                                                                     <  1:2465168/100‑4 (MQ=255)
                          tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTGAGGCaaa                                                                     >  1:4609050/1‑100 (MQ=255)
                          tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaa                                                                     >  1:3552062/1‑100 (MQ=255)
                          tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaa                                                                     >  1:1858958/1‑100 (MQ=255)
                          tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaa                                                                     >  1:6043766/1‑100 (MQ=255)
                          tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaa                                                                     >  1:1500460/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTATGGCAAAg                                                                    >  1:316692/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGTAAAg                                                                    >  1:4091710/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                                    >  1:4648841/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                                    >  1:5267326/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                                    >  1:4962799/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                                    >  1:5132888/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                                    >  1:4802835/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                                    >  1:3765470/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                                    >  1:2458270/1‑100 (MQ=255)
                           aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                                    >  1:2965993/1‑100 (MQ=255)
                            cATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGa                                                                   >  1:793110/1‑100 (MQ=255)
                             ctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGAt                                                                  >  1:576775/2‑100 (MQ=255)
                             ctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGAt                                                                  >  1:585030/2‑100 (MQ=255)
                             aTGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaagaga                                                                  >  1:6157258/1‑96 (MQ=255)
                              tGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGAtt                                                                 >  1:2003170/1‑100 (MQ=255)
                              tGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGAtt                                                                 >  1:3101156/1‑100 (MQ=255)
                               gAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTACGGCAAAGAtcg                                                                >  1:4829334/1‑98 (MQ=255)
                               gAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGAtcg                                                                >  1:1282298/1‑98 (MQ=255)
                               gAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTa                                                                >  1:3754504/1‑100 (MQ=255)
                                aaaGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAg                                                               >  1:680554/1‑100 (MQ=255)
                                    ctAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGa                                                           >  1:50465/2‑100 (MQ=255)
                                    ctAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGa                                                           >  1:2836813/2‑100 (MQ=255)
                                     tAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGaa                                                          >  1:6037533/1‑100 (MQ=255)
                                      aaaGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAGGGCAAAGAtcggaagagc                                                         >  1:4382384/1‑91 (MQ=255)
                                      aaaGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAAc                                                         >  1:4557973/1‑100 (MQ=255)
                                          gtAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGa                                                     >  1:2802610/2‑100 (MQ=255)
                                           tAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATCAAAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGa                                                     >  1:3780281/1‑100 (MQ=255)
                                           tAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaa                                                    >  1:543044/1‑100 (MQ=255)
                                           tAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaa                                                    >  1:5462590/1‑100 (MQ=255)
                                           caaTGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaa                                                    >  1:5142335/2‑100 (MQ=255)
                                            aaTGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAggga                                                   >  1:1266723/1‑97 (MQ=255)
                                            aaTGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaaa                                                   >  1:418346/1‑100 (MQ=255)
                                            aaTGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaaa                                                   >  1:3999524/1‑100 (MQ=255)
                                            aaTGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaaa                                                   >  1:1012225/1‑100 (MQ=255)
                                               gCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAATag                                                >  1:933148/1‑100 (MQ=255)
                                               gCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACag                                                <  1:2708951/100‑1 (MQ=255)
                                               gCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACag                                                <  1:3039911/100‑1 (MQ=255)
                                               gCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACag                                                <  1:5558320/100‑1 (MQ=255)
                                               gCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACac                                                >  1:5157067/1‑99 (MQ=255)
                                                     gataCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACaggcagat                                          >  1:2728815/2‑94 (MQ=255)
                                                      ataCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCGAAAACagatcggaa                                         >  1:3645802/1‑94 (MQ=255)
                                                      ataCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAACCAGAGAtcgg                                         >  1:3121045/1‑97 (MQ=255)
                                                           aaTCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAg                                    >  1:1398350/1‑100 (MQ=255)
                                                               aaaaTATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTag                                <  1:108241/100‑1 (MQ=255)
                                                                      ccccACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGt                         >  1:646472/4‑100 (MQ=255)
                                                                        tCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTa                       >  1:4024971/1‑100 (MQ=255)
                                                                          gacccaaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACg                     >  1:1094176/5‑100 (MQ=255)
                                                                           acccaaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGa                    >  1:2234539/4‑100 (MQ=255)
                                                                              caaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACa                 >  1:405075/1‑100 (MQ=255)
                                                                              caaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACa                 >  1:3072241/1‑100 (MQ=255)
                                                                                tccgc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACaaa               >  1:896315/5‑100 (MQ=255)
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ATTACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATACAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACAAAATAATAAAGAATA  >  NC_007793/1353931‑1354123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑