| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,115,458 | G→C | intergenic (+183/‑29) | SAUSA300_RS05470 → / → SAUSA300_RS05475 | membrane protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,115,458 | 0 | G | C | 100.0% | 44.6 / NA | 17 | intergenic (+183/‑29) | SAUSA300_RS05470/SAUSA300_RS05475 | membrane protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (15/2); total (15/2) | |||||||||||
GATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGACACAGTTATGTCAGTGTTGAAAATTTGCTAA > NC_007793/1115368‑1115550 | gATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGaaaa > 1:5452172/1‑100 (MQ=255) cccTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCt > 1:5495747/2‑100 (MQ=255) tAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTAt > 1:5549322/1‑100 (MQ=255) tAACTGTCCA‑TTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATg > 1:4403840/1‑100 (MQ=255) aaCTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAGATcggaaga > 1:2217035/1‑94 (MQ=255) aCTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGa > 1:5376690/1‑100 (MQ=255) gTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGt > 1:857905/1‑100 (MQ=255) gTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGt > 1:2647213/1‑100 (MQ=255) ccATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGTTa > 1:4895030/1‑100 (MQ=255) aCATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGTTAAAATTATGCCTg > 1:2781521/1‑100 (MQ=255) cATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGa < 1:3538471/100‑1 (MQ=255) cATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGTTAAAATTATACCTGa < 1:5283334/100‑1 (MQ=255) aataatGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGCTAAAATTATGCCAAAAgatcggaagagca > 1:4893036/1‑90 (MQ=255) ttAGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGACACAGTTATGTCAGTGTTg > 1:4971717/2‑100 (MQ=255) aGGTTATGATATAGAGTCTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGACACAGTTATGTCAGTGTTGaa > 1:4890002/1‑100 (MQ=255) aGGTTATGATATAGAGTCT‑GGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGACACAGTTATGTCAGTGTTGaaa > 1:1613711/1‑100 (MQ=255) ataGAGTCTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGACACAGTTATGTCAGTGTTGAAAATTTGCtaa > 1:2474582/1‑100 (MQ=255) | GATACCTTAACTGTCCATTTTTTTATACATATTTTAATCTTAATAATGAAATTCAACCTGAAAACATAAAGATAGGTTATGATATAGAGTGTAGGGAAAATCTTTATGACGTTAAAATTATGCCTGAAGATGATTTTGTTTTATCGAAACGACACAGTTATGTCAGTGTTGAAAATTTGCTAA > NC_007793/1115368‑1115550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |