| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 903,337 | C→T | intergenic (+44/‑146) | SAUSA300_RS04430 → / → SAUSA300_RS04435 | Fe‑S cluster assembly protein SufB/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 903,337 | 0 | C | T | 93.3% | 33.9 / ‑4.3 | 15 | intergenic (+44/‑146) | SAUSA300_RS04430/SAUSA300_RS04435 | Fe‑S cluster assembly protein SufB/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (14/0); total (14/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.67e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.44e-01 | |||||||||||
CGGTCGAAATGAACCGTTTAATCAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAACAAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTA > NC_007793/903241‑903433 | cgGTCGAAATGAACCGTTTAATCAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTAt > 1:4975881/1‑100 (MQ=255) gAACCGTTTAATCAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCAtt > 1:4082568/1‑100 (MQ=255) agaCCGTTTAATCAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCAtt > 1:3174432/3‑100 (MQ=255) tgggTTTAATCAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCAtttt > 1:3556371/4‑100 (MQ=255) tAATCAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAcc > 1:1218264/1‑99 (MQ=255) tgcAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccat > 1:1443175/3‑97 (MQ=255) aTCAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccat > 1:1724857/1‑97 (MQ=255) acAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccatt > 1:399621/2‑96 (MQ=255) cAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccattt > 1:3761859/1‑95 (MQ=255) cAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccattt > 1:38147/1‑95 (MQ=255) cAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccattt > 1:5878064/1‑95 (MQ=255) caGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccattta > 1:1486312/2‑94 (MQ=255) aGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccatttac > 1:1585063/1‑93 (MQ=255) aGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCTATTCTTAACTGTCGAAAACGGTTATTGATACCATTTTGATAccatttac > 1:5115941/1‑93 (MQ=255) tGGCTATTGATACCATTTTGATACTGAATATAACAAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTa < 1:1968248/100‑1 (MQ=255) | CGGTCGAAATGAACCGTTTAATCAAGTTCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATACTGAATATAACAAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTA > NC_007793/903241‑903433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |