| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 895,235 | T→C | intergenic (‑106/‑928) | SAUSA300_RS04395 ← / → SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 895,235 | 0 | T | C | 81.8% | 15.5 / ‑1.1 | 11 | intergenic (‑106/‑928) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (1/8); total (1/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTATAATTTATTTGCAATCGATTACAAAGTAATTTTACAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATATTATTATTACAATATATTAATTTTGAGCTGGAAATATTCGTTATTTATGCTATAATCATTTTAGACACAGCAATGTGTTC > NC_007793/895140‑895310 | ccTGTAACTTATTTGCAATCGATTACAAAGTAATTTTAGAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAATCCATAAAATtttatcattg > 1:1184594/1‑99 (MQ=255)ccTATAATTTATTTGCAATCGATTACAAAGTAATTTTACAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATAttattatta > 1:3067669/1‑100 (MQ=255)ccTATAATTTATTTGCAATCGATTACAAAGTAATTTTACAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATAttattatta > 1:3859474/1‑100 (MQ=255) tACAAAGTAATTTTACAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATATTATTATTACAATATATTAATTTTGAGCTggg < 1:6202637/100‑2 (MQ=255) aCAAAGTAATTTTAGAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGaa > 1:4361186/1‑100 (MQ=255) ttttATAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATATTATTATTACAATATATTAATTTTGAGCTGGAAATATTCGtt < 1:2924713/100‑1 (MQ=255) tagagttattattTATGTAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGtcatt < 1:4394826/95‑1 (MQ=255) agaaTTATTATTTATGTAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGtcattt < 1:4776130/98‑1 (MQ=255) ttatttatGTAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCtat < 1:564969/100‑1 (MQ=255) tAAATCAATTAAATAATTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGtttt < 1:5112944/100‑1 (MQ=255) aatTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGTTTTAGACACAGCAAtgt < 1:1682216/100‑1 (MQ=255) aatTATTAACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGTTTTAGACACAGCAAtgt < 1:5350578/100‑1 (MQ=255) attaACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGTTTTAGACACAGCAAtgtgcct < 1:5961437/100‑4 (MQ=255) attaACAAATCCATAAAATTTTATCATTGAAATATAATAATTTTGAGCTAGAAATATTCGTCATTTATGCTATAATCGTTTTAGACACAGCAATGTGTTc < 1:1033480/100‑1 (MQ=255) | CCTATAATTTATTTGCAATCGATTACAAAGTAATTTTACAATTATTATTTATGTAAATCAATTAAATAATTATTAACAAAGATATAAAATATTATTATTACAATATATTAATTTTGAGCTGGAAATATTCGTTATTTATGCTATAATCATTTTAGACACAGCAATGTGTTC > NC_007793/895140‑895310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |