| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 725,905 | T→C | intergenic (+31/+557) | SAUSA300_RS03485 → / ← SAUSA300_RS03490 | inorganic phosphate transporter/peptidase M23 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 725,905 | 0 | T | C | 86.2% | 50.8 / 2.9 | 29 | intergenic (+31/+557) | SAUSA300_RS03485/SAUSA300_RS03490 | inorganic phosphate transporter/peptidase M23 |
| Reads supporting (aligned to +/- strand): ref base T (0/4); new base C (0/25); total (0/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.09e-02 | |||||||||||
TTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAG > NC_007793/725810‑725987 | ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcagc < 1:395854/100‑3 (MQ=255)ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcacc < 1:117429/100‑2 (MQ=255)ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcacc < 1:4699445/100‑2 (MQ=255)ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcacc < 1:4068494/100‑2 (MQ=255)ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcacc < 1:6005890/100‑2 (MQ=255)ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcacc < 1:2141070/100‑2 (MQ=255)ttacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaca < 1:2001830/100‑1 (MQ=255) tacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcacca < 1:3448189/100‑3 (MQ=255) tacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcacca < 1:1856260/100‑3 (MQ=255) tacattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcacca < 1:1507294/100‑3 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAGCAAAACTGAACTTCAATACcaccag < 1:4590578/100‑4 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaccat < 1:2485474/100‑4 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaccat < 1:2657701/100‑4 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaccat < 1:683137/100‑4 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaccat < 1:59093/100‑4 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaccat < 1:3957353/100‑4 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACcaa < 1:672557/100‑1 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACcaa < 1:5263904/100‑1 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACcaa < 1:1496830/100‑1 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACcaa < 1:3280640/100‑1 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACCACcaa < 1:1864937/100‑1 (MQ=255) acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACAAAACTGAACTTCAATACcaccat < 1:4862790/100‑4 (MQ=255) cattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaccatg < 1:5863033/100‑5 (MQ=255) cattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaccatg < 1:208261/100‑5 (MQ=255) ttacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAATACcaccatagc < 1:4286998/100‑7 (MQ=255) tCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTa < 1:859968/100‑1 (MQ=255) tGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGt < 1:366879/100‑1 (MQ=255) actaaactGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCa < 1:672513/100‑1 (MQ=255) taaactGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAg < 1:5700097/100‑1 (MQ=255) | TTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAG > NC_007793/725810‑725987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |